OM001
Advances in Coupled Physical-Biogeochemical Modeling: Continental Shelves, Estuaries and the Coastal Ocean

Session ID#: 85243

Session Description:
The coastal ocean is a dynamic, complex region where multi-scale processes interact and create conditions suitable for rich ecosystems. Furthermore, the coastal ocean is substantially impacted by both climate change (e.g., alterations to temperature, freshwater discharge, sea level) and the direct impact of human activities (e.g. fishing, aquaculture, watershed nutrient and carbon inputs). Since global and regional ocean models usually lack the necessary spatial resolution to fully represent many of the processes occurring nearshore, there is a need for high-resolution coastal models. These models can be used to understand physical and biogeochemical variability associated with shallow, nearshore environments, including sediment-water exchange, benthic primary production, and complex shorelines and bathymetry. This complexity within coastal regions, both in terms of geography and physical and biogeochemical dynamics, makes these modeling exercises challenging, region-specific, and applicable to a host of fundamental and applied questions. Nevertheless, commonalities can be drawn among different regions and models, such that the modeling community can benefit immensely by sharing experiences and results. Therefore, we call for contributions on coupled physical-biogeochemical models of different coastal regions, from estuaries and near-shore environments to enclosed seas and continental shelves. Our goal is to provide a forum to discuss and learn from the challenges faced in different geographic regions and with different model architectures.
Index Terms:

4217 Coastal processes [OCEANOGRAPHY: GENERAL]
4235 Estuarine processes [OCEANOGRAPHY: GENERAL]
4255 Numerical modeling [OCEANOGRAPHY: GENERAL]
4805 Biogeochemical cycles, processes, and modeling [OCEANOGRAPHY: CHEMICAL]


Primary Chair:  Laura Bianucci, Institute of Ocean Sciences, Fisheries and Oceans Canada, Sidney, BC, Canada
Co-Chair:  Jeremy M Testa, University of Maryland Center for Environmental Science, Chesapeake Biological Laboratory, Solomons, MD, United States
Primary Liaison:  Laura Bianucci, Institute of Ocean Sciences, Fisheries and Oceans Canada, Sidney, BC, Canada
 
Coupled Ocean-Wave Models for Galway Bay (639577)
Clement Calvino1, Frederic Dias1 and Tomasz Dabrowski2, (1)University College Dublin, Earth Institute, Dublin, Ireland, (2)Marine Institute Ireland, Galway, Ireland
 
GLOBAL CLIMATE MODELS OVERESTIMATE EXPOSURE REGIMES IN NEARSHORE ENVIRONMENT (639686)
Matheus Fagundes1, Fiorenza Micheli2, Giulio De Leo3, Steven Yitzchak Litvin4, Charles A. Boch4, James P Barry4, Sorush Omidvar5 and Clifton Brock Woodson6, (1)University of Georgia, Engineering, Athens, GA, United States, (2)Stanford University, Stanford, CA, United States, (3)Stanford University, Hopkins Marine Station, Pacific Grove, CA, United States, (4)Monterey Bay Aquarium Research Institute, Moss Landing, CA, United States, (5)Research Assistant, Engineering, Athens, GA, United States, (6)University of Georgia, Athens, GA, United States
 
Ecological (biogeochemical) Predictions for the Inner Salish Sea given Warming Temperatures and Increasing Nutrient and Carbon Levels in Upwelled Ocean Waters (640537)
Tarang Khangaonkar, Adi Nugraha and Lakshitha Premathilake, Pacific Northwest National Laboratory, Seattle, WA, United States
 
Development of Long Range Hypoxia Forecasts for the Northern Gulf of Mexico (641538)
Dubravko Justic1, Lixia Wang1, Z. George Xue1, Zhengchen Zang1, Dong S Ko2, Nancy N Rabalais1 and Kanchan Maiti3, (1)Louisiana State University, Oceanography and Coastal Sciences, Baton Rouge, LA, United States, (2)Naval Research Lab., Oceanography, Stennis Space Center, MS, United States, (3)Louisiana State University, Baton Rouge, LA, United States
 
Finite Volume Community Ocean Model (FVCOM) provides high spatio-temporal hydrodynamics to inform biogeochemical wetland-estuarine models. (641640)
Lisa Ziegler and Raleigh R Hood, University of Maryland Center for Environmental Science Horn Point Laboratory, Cambridge, MD, United States
 
A regional biogeochemical model outperforms global Earth System Models in northwest North Atlantic shelf waters (641760)
Arnaud Laurent, Dalhousie University, Halifax, NS, Canada, Katja Fennel, Dalhousie University, Department of Oceanography, Halifax, NS, Canada and Angela M. Kuhn, Scripps Institution of Oceanography, La Jolla, CA, United States
 
Can pCO2 observation help constrain predator-prey interactions in a biological model? (641824)
Krysten Elizabeth Rutherford1, Katja Fennel2, Arnaud Laurent3 and Helmuth Thomas3, (1)Dalhousie University, Oceanography, Halifax, NS, Canada, (2)Dalhousie University, Department of Oceanography, Halifax, NS, Canada, (3)Dalhousie University, Halifax, NS, Canada
 
Modelling the role of river organic matter loads on hypoxia development off the Pearl River Estuary (642358)
Liuqian Yu1, Jianping Gan2, Minhan Dai3, CHI Wing Hui1, Zhiqiang Liu4, Zhongming Lu5 and Dou LI6, (1)The Hong Kong University of Science and Technology, Department of Mathematics, Hong Kong, Hong Kong, (2)The Hong Kong University of Science and Technology, Department of Mathematics and Department of Ocean Science, Hong Kong, Hong Kong, (3)State Key Laboratory of Marine Environmental Science, Xiamen University, Xiamen, China, (4)Southern University of Science and Technology, Department of Ocean Science and Engineering, Shenzhen, China, (5)The Hong Kong University of Science and Technology, Division of Environment, Hong Kong, Hong Kong, (6)The Hong Kong University of Science and Technology, Department of Ocean Science, Hong Kong, Hong Kong
 
A modeling study of estuarine-shelf circulation using a composite tidal and subtidal open boundary condition (643145)
Zhiqiang LIU, Southern University of Science and Technology, Department of Ocean Science and Engineering, Shenzhen, China and Jianping Gan, The Hong Kong University of Science and Technology, Department of Mathematics and Department of Ocean Science, Hong Kong, Hong Kong
 
Modelling oxygen dynamics in a Canadian archipelago (Discovery Islands, BC) (643727)
Laura Bianucci1, Michael Foreman1, Wendy Callendar1, Hayley V Dosser2, Maxim V. Krassovski1, Pramod P Thupaki3, Peter Chandler1 and Jennifer Jackson4, (1)Institute of Ocean Sciences, Fisheries and Oceans Canada, Sidney, BC, Canada, (2)University of British Columbia, Earth, Ocean and Atmospheric Sciences, Vancouver, BC, Canada, (3)Hakai Institute, BC, Canada, (4)Hakai Institute, Victoria, BC, Canada
 
Biogeochemical simulation of San Francisco Bay using an unstructured-grid model (643928)
Zhengui Wang, University of Maine, Orono, ME, United States, Fei Chai, Second Institute of Oceanography, State Oceanic Administration, State Key Laboratory of Satellite Ocean Environment Dynamics, Hangzhou, China and Huijie Xue, University of Maine, United States
 
The Forecasting Model of the Environmental Dynamics of the Northern Adriatic Sea. Structure and Preliminary Results. (646082)
Isabella Scroccaro1, Marco Zavatarelli1 and Tomas Lovato2, (1)University of Bologna, Bologna, Italy, (2)Euro-Mediterranean Centre on Climate Change Foundation, Bologna, Italy
 
Modeling of Ocean Acidification in the Massachusetts Bay/Boston Harbor and over the US Northeast Shelf (646660)
Lu Wang1, Changsheng Chen1, Robert C Beardsley2 and Joseph Salisbury II3, (1)University of Massachusetts Dartmouth, New Bedford, MA, United States, (2)WHOI, Woods Hole, MA, United States, (3)University of New Hampshire, Durham, NH, United States
 
Physical-Biological Variability Analysis of a Pacific Coast Lagoon (Ojo de Liebre) Through a Hydrodynamic-NPZD Coupled Numerical Ocean Model (647190)
Gabriela Reséndiz Colorado and David Rivas, CICESE, Biological Oceanography, Ensenada, Baja California, BJ, Mexico
 
Influence of the Hydrodynamics on the Phytoplankton-Biomass Variability in Bahía de los Ángeles, Baja California: Results from a Numerical Physical-Biological Coupled Ocean Model (647585)
Nadia Lucía López Tejada1, David Rivas2 and Ernesto García-Mendoza2, (1)CICESE, Ensenada, Baja California, BJ, Mexico, (2)CICESE, Biological Oceanography, Ensenada, Baja California, BJ, Mexico
 
Modeling productivity in lower trophic levels in Otsuchi Bay, northeast of Japan, using a nested OGCM with a biogeochemical component (650507)
Takashi T Sakamoto, Atmosphere and Ocean Research Institute University of Tokyo, Tokyo, Japan, Shogo Urakawa, Meteorological Research Institute, Japan Meteorological Agency, Tsukuba, Japan, Sachihiko Itoh, Atmos. & Ocean Res. Institute, Kashiwa, Japan, Hiroyasu Hasumi, Atmosphere and Ocean Research Institute, The University of Tokyo, Kashiwa, Japan and Kiyoshi Tanaka, Atmos Ocean Inst, Univ Tokyo, Kashiwa, Chiba, Japan
 
Ecoregions in the Mediterranean Sea through the reanalysis of phytoplankton functional types and carbon fluxes (650535)
Stefano Ciavatta1, Susan Kay2, Robert J W Brewin2,3, Rachel Cox4, Annalisa Di Cicco5, Francesco Nencioli2, Luca Polimene6, Michela Sammartino7, Rosalia Santoleri8, Jozef Skakala2 and Manolis Tsapakis9, (1)Plymouth Marine Laboratory / National Centre for Earth Observation, Plymouth, United Kingdom, (2)Plymouth Marine Laboratory, Plymouth, United Kingdom, (3)College of Life and Environmental Sciences, University of Exeter, Penryn, United Kingdom, (4)AquaBioTech Group, Mosta, Malta, (5)CNR-ISMAR, Rome, Italy, (6)Plymouth Marine Laboratory, MEMP, Plymouth, United Kingdom, (7)CNR Institute of Atmospheric Sciences and Climate, Rome, Italy, (8)CNR – Istituto di Scienze Marine, Rome, Italy, (9)HCMR – Institute of Oceanography, Greece
 
Influence of River Inputs and Diurnal Sea Breeze on the Tidal Inlet Exchanges that control the Marine Ecosystem and Biogeochemical Processes of the Mississippi Sound and Bight (650916)
Jeremy David Wiggert1, Courtney Bouchard1, Michael S Dinniman2, Mustafa Kemal Cambazoglu3, Patrick J Fitzpatrick4, Brandy N Armstrong5 and Eileen E Hofmann2, (1)University of Southern Mississippi, Stennis Space Center, MS, United States, (2)Old Dominion University, Center for Coastal Physical Oceanography, Norfolk, VA, United States, (3)The University of Southern Mississippi, Division of Marine Science, Stennis Space Center, MS, United States, (4)Mississippi State University, Geosystems Research Institute, Stennis Space Center, MS, United States, (5)USGS, Falmouth, MA, United States
 
Nesting Resolution Study of Narragansett Bay Using the Regional Ocean Modeling System (651270)
Xiaoyu Fan, Brown University, Department of Earth, Environmental and Planetary Sciences, Providence, RI, United States, Haili Wang, Nanjing University of Information Science and Technology, Nanjing, China, Baylor Fox-Kemper, Brown University, Providence, RI, United States and Changming Dong, University of California, Department of Atmospheric and Oceanic Sciences, Los Angeles, United States
 
Numerical modeling of the impact of sediment driven processes on bottom water chemistry over the Louisiana continental shelf (651352)
Linlin Cui1, Courtney Kay Harris1, Elisa Aitoro1, Wei-Jun Cai2 and Kanchan Maiti3, (1)Virginia Institute of Marine Science, Gloucester Point, VA, United States, (2)University of Delaware, School of Marine Science and Policy, Newark, DE, United States, (3)Louisiana State University, Baton Rouge, LA, United States
 
Submesoscale High-Resolution Modeling of an Observed Frontal Zone in the Mississippi Bight (651587)
Travis Smith1, Richard W Gould Jr2, Igor Shulman1 and Stephanie C Anderson3, (1)Naval Research Laboratory, Ocean Sciences, Stennis Space Center, MS, United States, (2)US Naval Research Laboratory, Stennis Space Center, MS, United States, (3)Naval Research Laboratory, Stennis Space Center, MS, United States
 
Development of a Coupled Ecosystem Model for the Coastal Ocean Environment (651590)
Jang-Geun Choi, University of New Hampshire, Department of Earth Science, Durham, NH, United States and Thomas Charles Lippmann, University of New Hampshire, Durham, NH, United States
 
Modelling the Impact of Macronutrients on the Eutrophication Status of Small Estuaries (651593)
Rebecca Huggett1, Duncan A Purdie1 and Ivan David Haigh2, (1)University of Southampton, Ocean and Earth Science, Southampton, United Kingdom, (2)Ocean and Earth Science, National Oceanography Centre Southampton, Southampton, United Kingdom
 
A Computationally Efficient Parametrization of the Underwater Light Field for Biogeochemical Models in Coastal Waters (651625)
Jochen Wollschläger1, Beke Tietjen1 and Oliver Zielinski1,2, (1)University of Oldenburg, Marine Sensor Systems Group, Institute for Chemistry and Biology of the Marine Environment, Oldenburg, Germany, (2)German Research Center for Artificial Intelligence, Marine Perception Group, Oldenburg, Germany
 
A Coupled Modeling System for Simulating Oil-Biological-Sediment Interactions in the Ocean (652178)
Steven L Morey1, Eric Chassignet2, Dmitry S Dukhovskoy3, Courtney Kay Harris4, Victoria Coles5, Michael R Stukel3, Robert D Hetland6, Kristen M Thyng6, Tian-Jian Hsu7, Andrew James Manning8, Olivia Mason9, Veronica Ruiz Xomchuk10, Daijiro Kobashi6, Lixin Qu11, Leiping Ye12, Linlin Cui4, Xu Chen13 and Jiaze Wang5, (1)Florida Agricultural and Mechanical University, School of the Environment, Tallahassee, FL, United States, (2)Florida State University, Center for Ocean-Atmospheric Prediction Studies, Tallahassee, FL, United States, (3)Florida State University, Tallahassee, FL, United States, (4)Virginia Institute of Marine Science, Gloucester Point, VA, United States, (5)University of Maryland Center for Environmental Science, Horn Point Laboratory, Cambridge, MD, United States, (6)Texas A&M University, College Station, TX, United States, (7)University of Delaware, Civil and Environmental Engineering, Newark, DE, United States, (8)HR Wallingford Ltd, Coasts & Oceans Group, Wallingford, United Kingdom, (9)Florida State University, United States, (10)Texas A&M University, Oceanography, College Station, TX, United States, (11)Texas A&M University College Station, Oceanography, College Station, TX, United States, (12)University of Delaware, Newark, DE, United States, (13)Florida State University, Center for Ocean-Atmospheric Prediction Studies, Tallahassee, United States
 
Short water residence times on the global continental shelves support an efficient cross-shelf transfer of organic matter: Was the pre-industrial coastal ocean already a global CO2 sink? (653159)
Fabrice Lacroix, Hamburg, Germany, Tatiana Ilyina, Max Planck Institute for Meteorology, Hamburg, Germany, Pierre A. G. Regnier, Université Libre de Bruxelles, Brussels, Belgium and Goulven Gildas Laruelle, Université Libre de Bruxelles, Brussel, Belgium
 
Discerning effects of warming, sea level rise and nutrient reduction on long-term hypoxia trend in Chesapeake Bay (653243)
Wenfei Ni, University of Maryland Center for Environmental Science, Cambridge, MD, United States, Ming Li, University of Maryland Center for Environmental Science Horn Point Laboratory, Cambridge, MD, United States and Jeremy M Testa, University of Maryland Center for Environmental Science, Chesapeake Biological Laboratory, Solomons, MD, United States
 
A mechanistic model to predict seasonal timing and spatial distribution of Prorocentrum minimum blooms in Chesapeake Bay (653873)
Fan Zhang, Ming Li, Patricia M Glibert and So Hyun Ahn, University of Maryland Center for Environmental Science Horn Point Laboratory, Cambridge, MD, United States
 
Climate downscaling projections of estuarine acidification and hypoxia in Chesapeake Bay in the 21st century (654284)
Ming Li1, Yijun Guo2, Wei-Jun Cai3, Jeremy M Testa4, Chunqi Shen4, Wenfei Ni5 and George Gerard Waldbusser6, (1)University of Maryland Center for Environmental Science Horn Point Laboratory, Cambridge, MD, United States, (2)University of Maryland Center for Environmental Science Horn Point Laboratory, Cambridge, United States, (3)University of Delaware, School of Marine Science and Policy, Newark, DE, United States, (4)University of Maryland Center for Environmental Science, Chesapeake Biological Laboratory, Solomons, MD, United States, (5)University of Maryland Center for Environmental Science, Horn Point Lab, Cambridge, MD, United States, (6)Oregon State University, College of Ocean, Earth and Atmospheric Sciences, Corvallis, OR, United States
 
Influence of Diurnal Sea Breeze on Residence Time and Associated Biogeochemical Processes in the Mississippi Sound and Bight (654599)
Courtney Bouchard1, Mustafa Kemal Cambazoglu2, Michael S Dinniman3, Patrick J Fitzpatrick4, Eileen E Hofmann3 and Jeremy David Wiggert2, (1)University of Southern Mississippi, Stennis Space Center, MS, United States, (2)The University of Southern Mississippi, Division of Marine Science, Stennis Space Center, MS, United States, (3)Old Dominion University, Center for Coastal Physical Oceanography, Norfolk, VA, United States, (4)Mississippi State University, Geosystems Research Institute, Stennis Space Center, MS, United States
 
Projected Ocean Acidification and Deoxygenation Along the Canadian Northeast Pacific Continental Shelf (654672)
Amber Holdsworth1, James R Christian1 and Youyu Lu2, (1)Fisheries and Oceans Canada, Victoria, BC, Canada, (2)Bedford Inst of Oceanography, Dartmouth, NS, Canada
 
Modeling the Florida Bay Ecosystem Using a Coupled Physical-Biogeochemical-Seagrass Model (655416)
Tongtong Liu, Xiamen University, Xiamen, China, Zhongping Lee, Unv. Massachusetts Boston, Boston, MA, United States, Shaoling Shang, Xiamen Univ, Fujian Xiamen, China, Tarandeep Singh Kalra, US Geological Survey, Woods Hole, MA, United States, Christopher J Madden, South Florida Water Management District, Coastal Ecosystems Division, West Palm Beach, FL, United States, Bradley T Furman, Florida Fish and Wildlife Research Institute, St. Petersburg, FL, United States and Mingshun Jiang, Florida Atlantic University, Boca Raton, FL, United States
 
Controls of High Silicic Acid in a Semi-enclosed Coastal Sea: Inferences from a Coupled Physical-Biological Ocean Model and Data (656436)
Elise Olson1, Susan Allen1, Debby Ianson2, Roger Francois3 and Doug Latornell4, (1)University of British Columbia, Vancouver, BC, Canada, (2)Institute of Ocean Sciences, Fisheries and Oceans Canada,, Sidney, BC, Canada, (3)University of British Columbia, Vancouver, Canada, (4)UBC, Vancouver, BC, Canada
 
A modeling study of the initiation of harmful algal blooms (HABs) in an estuary-subestuary system (656572)
Qubin Qin and Jian Shen, Virginia Institute of Marine Science, Gloucester Point, VA, United States
 
Modeling the factors which contribute to zooplankton congregation over Stellwagen Bank (656716)
Xuemei Zhai, Harvard University, Cambridge, MA, United States, Glenn Flierl, MIT, Cambridge, MA, United States and James J McCarthy, Harvard Univ, Cambridge, MA, United States
 
Variability of carbonate chemistry in Chesapeake Bay: a long-term study using simple and complex models (656723)
Chunqi Shen1, Jeremy M Testa1, Maria Herrmann2 and Raymond Najjar3, (1)University of Maryland Center for Environmental Science, Chesapeake Biological Laboratory, Solomons, MD, United States, (2)The Pennsylvania State University, University Park, PA, United States, (3)The Pennsylvania State University, Meteorology and Atmospheric Science, University Park, PA, United States
 
Temporal and spatial scales of oxygen depletion in a shallow tributary estuary in response to altered nutrient loading and elevated temperature (657193)
Jeremy M Testa1, Chunqi Shen1, Nicole M Basenback1, Kelly L Cole2, Wei Liu2, Amanda Moore1 and Damian C Brady2, (1)University of Maryland Center for Environmental Science, Chesapeake Biological Laboratory, Solomons, MD, United States, (2)University of Maine, School of Marine Sciences, Walpole, ME, United States
 
Offline Tracer Advection in a Realistic Regional Ocean Model (657826)
Kristen M Thyng1, Veronica Ruiz Xomchuk2, Daijiro Kobashi3, Lixin Qu4, Robert D Hetland3, Dmitry S Dukhovskoy5, Steven Morey6, Xu Chen7 and Eric Chassignet8, (1)Texas A&M University College Station, College Station, TX, United States, (2)Texas A&M University, Oceanography, College Station, TX, United States, (3)Texas A&M University, College Station, TX, United States, (4)Texas A&M University College Station, Oceanography, College Station, TX, United States, (5)Florida State University, Tallahassee, FL, United States, (6)Florida A&M University, School of the Environment, Tallahassee, FL, United States, (7)Florida State University, Center for Ocean-Atmospheric Prediction Studies, Tallahassee, United States, (8)Center for Ocean-Atmospheric Prediction Studies, Tallahassee, FL, United States
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