Preliminary Program subject to change
TA006 In Silico Systems Biology II
OverviewA critical component of systems biology is the development of in silico approaches to understand systems of interest. For this session, papers discussing novel uses of in silico methods to understand biological systems, as well as the development of new technologies and algorithms for in silico systems analysis are welcome. Research including experimental work is particularly encouraged.
Primary SponsorTopical A: Systems Biology (TA)

Chair

Mariajose Castellanos
Chemical and Biochemical Engineering
UMBC
1000 Hilltop Circle
Baltimore, MD 21250
Phone Number: 410-4558151
Email: mariajose@umbc.edu

CoChair

Jeffrey D. Varner
Department of Chemical and Biomolecular Engineering
Cornell University
120 Olin Hall
Ithaca, NY 14850
Phone Number: 607-255-4258
Fax Number: 607-255-9166
Email: jdv27@cornell.edu
Development of Validated Methods for Initial Value Problems Using A Constraint Satisfaction Approach
Ozlem Yilmaz, University of Connecticut, 191 Auditorium Rd. Unit 3222, Storrs, CT 06269, Luke E. K. Achenie, Department of Chemical Engineering, Virginia Polytechnic Institute and State University, Randolph Hall 133, Blacksburg, VA 24061 and Ranjan Srivastava, University of Connecticut, 191 Auditorium Rd., Unit 3222, Storrs, CT 06269
Multi-Scale Models For Synthetic Bioengineering
Yiannis N. Kaznessis, Chemical Engineering and Materials Science, University of Minnesota, 151 Amundson Hall, 421 Washington Ave SE, Minneapolis, MN 55454
An Optimization Based Method To Automatically Reconcile In Silico/in Vivo Growth Predictions
Vinay S. Kumar, Department of Industrial Engineering, The Pennsylvania State University, 147A, Fenske Lab, University Park, PA 16802 and Costas D. Maranas, Department of Chemical Engineering, The Pennsylvania State University, University Park, PA 16802
From Molecular Networks To Multicellular Structures: Predicting Phenotype Diversity And Transitions
Anand R. Asthagiri, Chemical Engineering, California Institute of Technology, 1200 E. California Blvd MC 210-41, Pasadena, CA 91125 and Claudiu Giurumescu, California Institute of Technology, Division of Chemistry and Chemical Engineering, Mail Code 210-41, Pasadena, CA 91125
Break
Scaffold-Mediated Temporal Control of Cell Signaling Dynamics
Arup K. Chakraborty, Chemical Engineering, Massachusetts Institute of Technology, Cambridge, MA 02139 and Jason W. Locasale, Biological Engineering, Massachusetts Institute of Techonology, 50 Ames St, E19-534, Cambridge, MA 02139
Towards An Integrated Computational Framework To Model Metabolism And The Synthesis Of Protein Products In Mammalian Cell Culture
Adam C. Baughman, Lealon L. Martin and Susan T. Sharfstein, Chemical & Biological Engineering, Rensselaer Polytechnic Institute, 110 8th Street, Ricketts Building, Troy, NY 12180
Probing The Effects Of Stochasticity In Biochemical Reaction Networks Using Multiscale Simulation
Leonard A. Harris, Aaron M. Piccirilli, Emily R. Majusiak and Paulette Clancy, School of Chemical and Biomolecular Engineering, Cornell University, Ithaca, NY 14850

Topical A: Systems Biology