Session: Mathematical Approaches in Systems Biology III: Kinetics and Dynamic Processes (2009 Annual Meeting)

Description:

This session is devoted to theoretical and computational studies of biological systems. Such systems include protein/DNA interactions, protein/protein interactions, genetic networks, metabolic pathways, and signal transduction pathways. Presentations will focus on theoretical and computational developments for the study of the behavior of these systems in response to stimulation or changes in their kinetic and thermodynamic properties. Contributions of novel computational strategies for systems biology are especially welcome.

Sponsor:

Engineering Fundamentals in Life Science

Chair:

Christopher Henry
Lab Scientist
Argonne National Laboratory
Mathematics and Computer Science
Building 221
Argonne, IL 60439
Phone Number: 847-757-4377
Email: chenry@mcs.anl.gov

Co-chairs:

Rajanikanth Vadigepalli and Maciek R. Antoniewicz

Papers:

316a

The Metabolic Modeling Landscape
Hyun-Seob Song, Purdue University; Doraiswami Ramkrishna, Purdue University

316b

Kinetic Modeling of the Phenylpropanoid Pathway in Petunia Hybrida
Neelanjan Sengupta, Purdue University; Amy J. Marshall-Colon, Purdue University; Natalia Dudareva, Purdue University; David Rhodes, Purdue University; John A. Morgan, Purdue University

316c

Next Generation Solution to Current Energy Problems: Algae to Biodiesel. A Kinetic Metabolic Model
Goncalo Maia, University of Maryland Baltimore County; Michael Pacella, UMBC; Jon Bollinger, UMBC; Micahel German, UMBC; Mariajose Castellanos, UMBC

316d

Application of Ensemble Modeling for Strain Design
Yikun Tan, University of California, Los Angeles; Matthew L. Rizk, University of California, Los Angeles; Carolina A. Contador, University of California, Los Angeles; Linh M. Tran, University of California, Los Angeles; James C. Liao, University of California, Los Angeles

Break

316e

Inferring Relevant Control Mechanisms for Interleukin-12 Signaling in Naive CD4+ T Cells
David Klinke, West Virginia University; Stacey D. Finley, Northwestern University; Deepti Gupta, Northwestern University

316f

Mathematical Modeling for IL6 and IL10 Signal Transduction in Steatosis
Zuyi (Jacky) Huang, Texas A& M University; Colby Moya, Texas A&M University; Peng Cheng, Texas A& M University; Arul Jayaraman, Texas A&M University; Juergen Hahn, Texas A& M University

316g

A Model of Compartmentation and Redox Effects in the Fasted Perfused Liver
Elie Chalhoub, Cleveland State University; Joanne Belovich, Cleveland State University

See more of this Group/Topical: Food, Pharmaceutical & Bioengineering Division

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