This preliminary program is subject to change.

Advances in Metabolic Engineering and Bioinformatics II - Computational


Description:
This session focuses on computational and in silico advances in metabolic engineering. Approaches for designing, understanding and analyzing metabolic and regulatory pathways will be emphasized as tools for providing insights for metabolic engineering of cells and organisms. This session differs from other metabolic engineering sessions, as it places greater emphasis on computational approaches for designing components, pathways, data integration and analysis. Examples include, but are not limited to, development of models (eg. genome-scale or kinetic), advances in metabolic flux analysis (including isotope label-based approaches), deduction of gene regulatory networks, bioinformatics, and methodologies to integrate and analyze ’omics datasets.

Sponsor:
Bioengineering


Chair:
Jennifer L. Reed
University of Wisconsin-Madison
Chemical and Biological Engineering
Madison, WI 53706
Phone Number: 608-262-0188
Email: reed@engr.wisc.edu

Co-Chair:
Mattheos A. G. Koffas
Associate Proffessor
University at Buffalo, the State University of New York
Chemical and Biological Engineering
904 Furnas Hall
Buffalo, NY 14260
Phone Number: 716-645-1198
Fax Number: 716-645-3822
Email: mkoffas@eng.buffalo.edu


Papers:
Reaction/Metabolite Standardization and Congruency Across Databases and Genome-Scale Metabolic Models
Akhil Kumar, The Pennsylvania State University; Patrick F. Suthers, The Pennsylvania State University; Costas D. Maranas, The Pennsylvania State University
A Novel Optimization Strategy for Microbial Strain Design
Joonhoon Kim, University of Wisconsin-Madison; Jennifer L. Reed, University of Wisconsin-Madison; Christos T. Maravelias, University of Wisconsin-Madison
Integrated Probabilistic Regulatory and Metabolic Network Analysis of Saccharomyces Cerevisiae for Biochemical Production
Amit Ghosh, University of Illinois Urbana Champaign; Huimin Zhao, University of Illinois at Urbana-Champaign; Nathan D. Price, University of Illinois Urbana Champaign
Kinetic Modeling of the Central Carbon Metabolism of Escherichia Coli
Ljubisa Miskovic, Ecole Polytechnique Fédérale de Lausanne (EPFL); Vassily Hatzimanikatis, Ecole Polytechnique Fédérale de Lausanne (EPFL)
Dynamic Behavior of Knockout Strains Predicted From Limited Data On Wild Type
Hyun-Seob Song, Purdue University; Doraiswami Ramkrishna, Purdue University
Dynamic Metabolic Flux Analysis at Metabolic Non-Steady State
Maciek R. Antoniewicz, Univerisity of Delaware; Robert Leighty, Univerisity of Delaware
See more of this Group/Topical: Food, Pharmaceutical & Bioengineering Division