Session: Mathematical Approaches in Systems Biology II (2010 Annual Meeting)

Description:

This session is devoted to theoretical and computational studies of biological systems. Such systems include protein/DNA interactions, protein/protein interactions, genetic networks, metabolic pathways, and signal transduction pathways. Presentations will focus on theoretical and computational developments for the study of the behavior of these systems in response to stimulation or changes in their kinetic and thermodynamic properties. Contributions of novel computational strategies for systems biology are especially welcome.

Sponsor:

Engineering Fundamentals in Life Science

Chair:

Zeynep Gumus
Instructor
Weill Medical College of Cornell University
Institute for Computational Biomedicine
1300 York Avenue (Box 75)
New York, NY 10065
Phone Number: (212) 746-6384
Fax Number: (212) 746-8690
Email: zeg2002@med.cornell.edu

Co-Chair:

Ipsita Banerjee
Assistant Professor
University of Pittsburgh
Chemical and Biological Engineering
1242 Benedum Hall
Pittsburgh, PA 15261
Phone Number: 412-624-2071
Fax Number: 412-624-9639
Email: ipb1@pitt.edu

Papers:

693a

Pharmacokinetic Parameter Estimation of Drug Distribution in An Entire Organism
Eric Lueshen, University of Illinois at Chicago; Cierra Hall, University of Illinois at Chicago; Andrej Mošať, University of Illinois at Chicago; Andreas A. Linninger, University of Illinois at Chicago

693b

Quantifying Synergy Effects of Multiple Drugs On Gene Expression in High-Throughput Experiments
Zeynep H. Gumus, Weill Medical College of Cornell University; Harel Weinstein, Weill Medical College of Cornell University

693c

Multiscale Dynamic Simulations of HIV Infection and the Antiretroviral Treatment at the Latency Stage
Samira Khalili, The Pennsylvania State University; Antonios Armaou, The Pennsylvania State University

693d

Robustness Analysis and Perturbation Assay Revealing Novel Cell Cycle Regulators
Xiling Shen, Cornell University

Break

693e

Simplifying Rule-Based Reaction Networks Using Timescale Analysis: The Interleukin-12 Signaling Pathway as An Illustrative Example
Brandon Dolly, West Virginia University; David Klinke, West Virginia University

693f

On the Incorporation of Direction and Magnitude in Statistical Correlation: Application to Gene-Microarray Data
Mano R. Maurya, Department of Bioengineering, University of California San Diego; Shankar Subramaniam, University of California San Diego

693g

In Silico Optimization of the Ethanol Production in Escherichia Coli in a Glycerol Media Implementing Dynamic Flux Balance Analysis and Experimental Validation
Carol M. Barreto, Universidad de los Andes; Jessica Paola Ramirez Angulo, Grupo de Diseńo de Productos y Procesos (GDPP), Universidad de los Andes; Jorge Mario Gomez Ramirez, Universidad de los Andes; Luke Achenie, Virginia Polytechnic Institute and State University; Andres Fernando González Barrios, Universidad de los Andes

See more of this Group/Topical: Food, Pharmaceutical & Bioengineering Division

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