Session: In Silico Systems Biology: Intracellular Signaling and Gene Regulation (2012 Annual Meeting)

Description:

A critical component of systems biology is the development of in silico approaches to understand systems of interest. Novel uses of in silico methods to understand biological systems, as well as the development of new technologies and algorithms for in silico systems analysis are examined.

Sponsor:

Topical A: Systems Biology

Chair:

Katy Kao
Assistant Professor
Texas A&M University
Chemical Engineering
212 Jack E. Brown Engineering Building
College Station, TX 77843
Phone Number: 979-845-5571
Fax Number: 979-845-6446
Email: katy@chemail.tamu.edu

Co-Chair:

Neda Bagheri
Assistant Professor
Northwestern University
Chemical & Biological Engineering
Evanston, IL Phone Number: 617-324-5671
Email: n-bagheri@northwestern.edu

Papers:

497a

The Membrane Environment Can Promote or Suppress Bistability in Cell Signaling Networks
Steven M. Abel, Massachusetts Institute of Technology; Arup K. Chakraborty, Ragon Institute of MGH, MIT, & Harvard

497b

Prediction of Therapeutic Microrna Based On Human Metabolic Network
Ming Wu, Michigan State University; Christina Chan, Michigan State University

497c

Minimal Reaction Network for Bistability in the MAPK Signalling Cascade
Otto Hadac, Institute of Chemical Technology, Prague; Igor Schreiber, Institute of Chemical Technology, Prague; Michal Pribyl, Institute of Chemical Technology, Prague; Stanislav Y. Shvartsman, Princeton University

497d

Modeling the Dynamics of Acute Phase Protein Expression in HepG2 Cells Stimulated by IL-6
Jens O.M. Karlsson, Villanova University; Zhaobin Xu, Villanova University; Arjun Plakkat, Pennsylvania State University; Calvin Hong Li, Villanova University; Zuyi (Jacky) Huang, Villanova University

497e

Resolution of Incoherent Immune Stimuli Through Intracellular Crosstalk
Camila Benaim, Northwestern University; Yishan Chuang, Northwestern University; Joshua N. Leonard, Northwestern University

497f

A Kinetic Platform to Determine the Fate of Nitric Oxide in Bacteria
Jonathan L. Robinson, Princeton University; Mark P. Brynildsen, Princenton University

497g

Decoding Robustness in Integrated Signaling and Gene Regulatory Networks Using a Combination of Global Sensitivity Analysis and Decision Trees
Hirenkumar Makadia, Thomas Jefferson University; James S. Schwaber, Daniel Baugh Institute for Functional Genomics and Computational Biology, Department of Pathology, Cell Biology and Anatomy, Thomas Jefferson University; Rajanikanth Vadigepalli, Thomas Jefferson University

497h

Doubly Penalized Approach for Reconstructing Biological Networks
Behrang Asadi, University of California, San Diego; Mano R. Maurya, Department of Bioengineering, University of California San Diego; Shankar Subramaniam, University of California San Diego; Daniel M. Tartakovsky, University of California, San Diego

See more of this Group/Topical: Topical A: Systems Biology

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