1 Workshop: Hands On With Molecular Simulation (Ticketed Event)


Description:
The molecular simulation community currently lacks a dedicated forum for collaborating on the open-source tools used for understanding chemical behaviors, despite a large and growing demand for one. Recent CoMSEF sessions focusing on molecular simulation reproducibility, usability, software engineering, machine learning, and methods advances, would all benefit from hands-on coding workshops where authors can guide learners through the tools they’ve developed, and where our community can more efficiently have the group conversations about library use, community standards, and reproducibility that we need. Hands-on with Molecular Simulation will provide an ideal venue to address this need. Students relatively new to the computational sciences, students and faculty who wish to get practice with recent developments in molecular simulation tools, and investigators building software packages whose visibility would be mutually beneficial to their work and the molecular simulation community will all be served by the proposed workshop.

Sponsor:
Computational Molecular Science and Engineering Forum


Chair:
Eric Jankowski
Assistant Professor
Boise State University
Micron School of Materials
Boise, ID
80207
Email: ericjankowski@boisestate.edu

Co-Chair:
Coray M. Colina
Professor
University of Florida
Chemistry
121 Steidle Building
Gainesville, FL
16802
Fax Number: 814-865-2917
Email: colina@chem.ufl.edu


Papers:
1b
Mosdef: Molecular Simulation and Design Framework
Christoph Klein, Vanderbilt University; János Sallai, Vanderbilt University; Andrew Z. Summers, Vanderbilt University; Christopher R. Iacovella, Vanderbilt University; Ákos Lédeczi, Vanderbilt University; Clare McCabe, Vanderbilt University; Peter T. Cummings, Vanderbilt University
1c
Managing Data Spaces, Performing MD, and Analyzing Trajectories with Signac, HOOMD-Blue, and Freud 
Carl Simon Adorf, University of Michigan; Joshua A. Anderson, University of Michigan; Eric S. Harper, University of Michigan; Sharon C. Glotzer, University of Michigan
1d
How to Recognize Garbage
Michael Shirts, University of Colorado Boulder
1e
How to Use the Atomistic Monte Carlo Package Cassandra: Liquid Phase Properties and Vapor-Liquid Phase Equilibria
Edward J. Maginn, University of Notre Dame; Eliseo Marin-Rimoldi, University of Notre Dame; Jindal K. Shah, Oklahoma State University; Ryan Gotchy Mullen, University of California
1f
Using Python to Standardize and Format Input to Popular Molecular Simulation Software
Coray M. Colina, University of Florida; Michael E. Fortunato, University of Florida
1g
Quantifying Uncertainty in Molecular Simulations
David A. Kofke, University at Buffalo, The State University of New York; Andrew J. Schultz, University at Buffalo, The State University of New York
Abstract Submissions Closed
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