The transPLANT Consortium - Special Focus on Triticeae Genome Resources

transPLANT is a consortium of 11 European partners gathered to address the challenges of complex plant genome data integration and to develop a trans-national infrastructure for plant genomic science. The project aims to establish and strengthen interconnections between plant genome data resources as well as to develop new platforms, common standards and tools to assist plant research.

In this computer demonstration we will introduce the official transPLANT web hub (http://transplantdb.eu/) where partner resources are registered and cross-linked. Advanced search interfaces allow users to query distributed plant genome resources and make use of transPLANT services and tools.

We will also briefly introduce triticeae genome data resources hosted by transPLANT partners as much data was generated here lately especially for wheat and barley.

MIPS PlantsDB (http://mips.helmholtz-muenchen.de/plant/genomes.jsp) is a genome database system for data retrieval, management and comparative genomics in plants. Data produced within the triticeaeGenome projects are managed and presented in the comparative framework of PlantsDB, such as results from the triticeae GenomeZipper analyses and data from bread wheat sequencing in UK.

INRA URGI GnpIS (http://urgi.versailles.inra.fr/gnpis): The GnpIS portal project (Genetic and Genomic Information System) is a tool aiming to provide simple and fast access to the data located in all URGI databases.

EBI Ensembl Plants: Ensembl Plants (http://plants.ensembl.org) is an integrating portal for data from plant genomes, offering access to many data types through a standard set of interfaces. The barley data is fully represented in Ensembl Plants and emerging wheat data can be visualised using Brachypodium as a reference.