Genomics-Assisted Breeding

About the workshop: In recent years, a truly impressive number of advances in genetics and genomics have greatly enhanced our understanding of structural and functional aspects of plant genomes. The complete genome sequences have become available for many crop species now. Due to advances in next generation sequencing technologies, it is possible to re-sequence mapping populations as well as germplasm collections in large numbers. In addition to routinely used linkage mapping and marker-assisted selection (MAS) approaches, several novel genetic and genomics tools/approaches such as genome-wide association studies (GWAS), marker-assisted recurrent selection (MARS), genomic selection (GS), functional genomics, etc. offer the possibilities to examine and utilize the structural as well as functional genetic variation in crop breeding. Holistic approach of enhancing the prediction of the phenotype from a genotype using genomics tools/approaches has been termed as 'genomics assisted breeding' (GAB) (Trends Plant Sci 10: 621 630). In fact, genomics assisted breeding has already shown its potential for crop improvement in several cereal species (Trends Biotech 24:490-499) and also in few legume species (Plant Breeding Rev 33:257-304). A critical assessment of the status and availability of genomic resources and genomics research in crop plant species and devising the strategies and approaches for effectively exploiting genomics research for crop improvement is the main objective of this workshop. Genomics specialists having extensive experience in applying genomics in breeding from both public and private sectors share their experience and propose novel ideas in this workshop to use GAB in an efficient manner.
Date: Tuesday, January 15, 2013
Time: 10:20 AM-12:30 PM
Room: Town and Country
Organizer:
Rajeev Kumar Varshney
10:20 AM
Welcome & Introduction


10:25 AM
Identification and Validation of SNPs Associated with a Maize Yield Component Trait via GWAS
Jinliang Yang, Iowa State University; Wei Wu, Iowa State University; Cheng-Ting Yeh, Iowa State University; Dan Nettleton, Iowa State University; Patrick S. Schnable, Iowa State University

10:45 AM
Flowering Time Regulation and Crop Improvement
Christian Jung, Christian Albrechts University of Kiel; Andreas Müller, Strube Research GmbH & Co. KG

11:05 AM
Molecular Breeding Of Root System Architectures For Improving Drought Resistance In Rice
Yusaku Uga, National Institute of Agrobiological Sciences

11:25 AM
Genomic Selection In Wheat Breeding Using Genotyping-By-Sequencing
Jesse Poland, Kansas State University; Jeffrey Endelman, Cornell University; Julie Dawson, Cornell University; Jessica Rutkoski, Cornell University; Shuangye Wu, Kansas State University; Yann Manes, CIMMYT; Susanne Dreisigacker, CIMMYT; José Crossa, CIMMYT; Hector Sanchez-Villeda, CIMMYT; Mark Sorrells, Cornell University; Jean-Luc Jannink, USDA ARS

11:45 AM
Linking Genome Wide Association Studies (GWAS) and Plant Breeding
Susan McCouch, Cornell University; Joshua N Cobb, Cornell University; Samuel Crowell, Cornell University; Genevieve DeClerck, Cornell University; Anthony Greenberg, Cornell University; Randy Clark, Cornell University; Alexandre Falcao, University of Campinas; Leon Kochian, Robert W. Holley Center, USDA-ARS & Cornell University; Jason Mezey, Cornell University; Rajeev Varshney, ICRISAT

12:05 PM
Applying High Density Markers To Crop Improvement: Initial Experiences From The CIMMYT Maize Program
Gary Atlin, Bill & Melinda Gates Foundation; Jeffrey Endelman, Cornell University; Xuecai Zhang, CIMMYT; Raman Babu, CIMMYT; Raman Babu, CIMMYT, c/o ICRISAT; Yoseph Beyene, CIMMYT, c/o ICRAF; Jean-Luc Jannink, USDA ARS; José Crossa, CIMMYT - International Maize and Wheat Improvement Centre

12:25 PM
Summary & Wrap-up


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