Analysis of Complex Genomes
Advances in genomics continue to drive paradigm-shifting changes in science and society. In this workshop, speakers and participants will discuss advances, accomplishments, questions, opportunities and challenges in complex genome assembly, analysis, modification and manipulation.
Date: Saturday, January 12, 2013
Time: 3:50 PM-6:00 PM
Room: Town and Country
Organizers:
David Stelly
,
Hongbin Zhang
and
Boulos Chalhoub
3:50 PM
Production of Long (1.5kb – 15.0kb), Accurate, DNA Sequencing Reads Using an Illumina HiSeq2000 to Support De novo Genome Assembly
Geoff Waldbieser, USDA - Agricultrural Research Service;
Michael Kertesz, Moleculo, Inc.;
Dmitry Pushkarev, Moleculo, Inc.;
Tim Blauwkamp, Moleculo, Inc.;
John Liu, Auburn University
4:10 PM
Optical Mapping and Nanocoding Systems Potentiate Genome Assembly and Discover Structural Variants
David C. Schwartz, University of Wisconsin-Madison;
Konstantinos Potamousis, University of Wisconsin-Madison;
Steve Goldstein, University of Wisconsin-Madison;
Mike Place, University of Wisconsin-Madison;
Mike Bechner, University of Wisconsin-Madison;
Prabu Ravindran, University of Wisconsin-Madison;
Kristy Kounovsky, University of Wisconsin-Madison;
Louise Pape, University of Wisconsin-Madison;
Brian Teague, University of Wisconsin-Madison;
John Nguyen, University of Southern California;
Fusheng Wei, University of Arizona, iPlant Collaborative;
Vivek Krishnakumar, J. Craig Venter Institute;
Victor Guryev, Hubrecht Institute;
Shu Ouyang, Michigan State University;
Christopher D. Town, J. Craig Venter Institute;
Edwin Cuppen, Hubrecht Institute;
Rod A. Wing, Arizona Genomics Institute, University of Arizona;
C. Robin Buell, Michigan State University;
Jeffrey Kidd, University of Washington-Seattle;
Evan Eichler, University of Washington;
Michael Waterman, University of Southern California;
Juan F. Medrano, University of California-Davis;
Shiguo Zhou, University of Wisconsin-Madison
4:30 PM
Advances In De Novo Sequencing Of Complex Eukaryotic Genomes
Jeremy Schmutz, HudsonAlpha Institute for Biotechnology;
Jarrod Chapman, DOE Joint Genome Institute;
Jerry Jenkins, HudsonAlpha Institute for Biotechnology;
Chia-Lin Wei, DOE Joint Genome Institute;
Uffe Hellsten, DOE Joint Genome Institute;
Kerrie W. Barry, DOE Joint Genome Institute;
Gerald A. Tuskan, Oak Ridge National Laboratory;
Len Pennacchio, DOE Joint Genome Institute;
Daniel S. Rokhsar, DOE Joint Genome Institute
5:10 PM
Decomplexifying The Bread Wheat Genome: A 1Gb Step Forward
Frederic Choulet, INRA GDEC;
Sébastien Theil, INRA GDEC;
Nicolas Guilhot, INRA GDEC;
Arnaud Couloux, CEA - Genoscope;
Valerie Barbe, CEA - Genoscope;
Adriana Alberti, CEA - Genoscope;
Michael Alaux, INRA - URGI;
Philippe Leroy, INRA GDEC;
Natasha Glover, INRA GDEC;
Josquin Daron, INRA GDEC;
Lise Pingault, INRA GDEC;
Hana Simkova, Institute of Experimental Botany;
Jaroslav Doleel, Institute of Experimental Botany;
Arnaud Bellec, INRA - CNRGV;
Helene Berges, INRA Toulouse;
Pierre Sourdille, INRA UMR Genetics, Diversity & Ecophysiology of Cereals;
Etienne Paux, INRA GDEC;
Hadi Quesneville, INRA - URGI;
Patrick Wincker, CEA - Genoscope;
Catherine Feuillet, INRA GDEC
