Plant Gene Families in Phytozome v10

Phytozome (http://www.phytozome.net) is a comparative hub for plant genome data and analysis. As a key feature of Phytozome 10, we provide a set of automatically generated protein-coding gene families along with corresponding phylogenetic trees, profiles, and ortholog and paralog assignments.  In addition to describing our overall gene family generation pipeline, we analyze the coverage of each of the families by other family- or domain-based classifications, like PANTHER, KOG, and PFAM.  Finally, we present the search, visualization, and assignment tools available at Phytozome for working with plant gene families.