2098
Allele Mining

This workshop discusses various aspects of genetic diversity among organisms; techniques to assay for it, methods of analysis, and how to use it to understand population structure, domestication history, and connections between genotype and phenotype.
Date: Saturday, January 11, 2014
Time: 1:30 PM-3:40 PM
Room: Golden Ballroom
Organizer:
Angela M. Baldo
1:30 PM
W008
Marker Derived Core Sets and Their Application to Allele Mining
Christopher M. Richards, USDA ARS Nat'l Ctr for Genetics Resources; Patrick Reeves, USDA ARS Nat'l Center for Genetic Resources Preservation

PDF file
1:51 PM
W009
Genome Mining: Evaluating Germplasm Core Collections for Population Structure and Naturally Occurring Admixture
Mark Wright, Cornell University; Susan McCouch, Cornell University

2:12 PM
W010
Evaluating Wild Grapevine Germplasm with Genotyping-By-Sequencing Methods for Conservation, Preservation, Genetics and Breeding
Jason Londo, USDA-ARS Grape Genetics Research Unit; Katie Hyma, Cornell University

2:33 PM
W011
A Novel Imputation Strategy Optimized for Low-Coverage Sequence Information
Kelly Swarts, Cornell University

2:54 PM
W012
Whole Genome Resequencing-Enabled Discovery and Functional Validation of Allelic Variants Associated with Cell Wall Chemistry and Mycorrhizal Symbiosis in Populus
Wellington Muchero, Oak Ridge National Laboratory; JianJun Guo, Oak Ridge National Laboratory; Jay Chen, Oak Ridge National Laboratory; Olaf Czarnecki, Oak Ridge National Laboratory; Anthony Bryan, BioEnergy Science Center, Oak Ridge National Laboratory; Sara Jawdy, Oak Ridge National Laboratory; Lee Gunter, Oak Ridge National Laboratory; Priya Ranjan, Oak Ridge National Laboratory; Stephen DiFazio, West Virginia University; Luke Evans, West Virginia University; Gancho T. Slavov, Aberystwyth University; Robert Sykes, National Renewable Energy Laboratory; Angella Ziebell, National Renewable Energy Laboratory; Jessy Labbe, Oak Ridge National Laboratory; Kelsey Yee, BioEnergy Science Center, Oak Ridge National Laboratory; Xiaohan Yang, Oak Ridge National Laboratory; Wendy Schackwitz, DOE Joint Genome Institute; Joel Martin, Lawrence Livermore National Laboratory; Juan Wang, Oak Ridge National Laboratory; Olivia Thompson, Oak Ridge National Laboratory; Gerald A. Tuskan, Oak Ridge National Laboratory

PDF file
3:15 PM
W013
The 3000 Rice Genome Project
Shuai-shuai Tai, BGI; Xin Liu, Beijing Genomics Institute-Shenzhen; Jun Li, BGI; Guojie Zhang, BGI; Bo Wang, BGI; Jun Wang, BGI; Ma. Elizabeth B. Naredo, International Rice Research Institute; Sheila Mae Q. Mercado, International Rice Research Institute; Myla Christy Rellosa, International Rice Research Institute; Renato A. Reano, International Rice Research Institute; Wen-Sheng Wang, Chinese Academy of Agricultural Sciences,; Yongming Gao, Institute of Crop Sciences/National Key Facility for Crop Gene Resources and Genetic Improvement; Xiu-Qing Zhao, Chinese Academy of Agricultural Sciences,; Jianlong Xu, Institute of Crop Sciences/National Key Facility for Crop Gene Resources and Genetic Improvement; Fan Zhang, Chinese Academy of Agricultural Sciences,; Yong-Li Zhou, Chinese Academy of Agricultural Sciences,; Bin-Ying Fu, Chinese Academy of Agricultural Sciences,; Grace Lee S. Capilit, International Rice Research Institute; Flora C. de Guzman, International Rice Research Institute; Jahuar Ali, International Rice Research Institute; Ruaraidh Hamilton, International Rice Research Institute; Nickolai Alexandrov, International Rice Research Institute; Ramil P. Mauleon, International Rice Research Institute; Xun Xu, BGI-Shenzhen; Hei Leung, International Rice Research Institute; Gengyun Zhang, BGI; Kenneth L. McNally, International Rice Research Institute; Zhi-Kang Li, Institute of Crop Sciences, CAAS, Beijing

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