2159
GMOD

GMOD is a collection of interopable open source software components for visualizing, annotating, and managing biological data. This workshop introduces several GMOD components that are particularly useful with genomic data: MAKER, a genome anotation pipeline; Galaxy, a genome analysis workflow and publishing; JBrowse, a next generation genome viewer; and Tripal, a web database construction toolkit. The goal of these sessions is to give attendees an idea of how to use GMOD tools to manage, analyze, and visualize their data. Sessions are aimed at biologists who have or soon will have genomic data. All sessions are Beginner to Intermediate. No prior knowledge of the tools is required. None of the sessions are hands-on.
Date: Wednesday, January 15, 2014
Time: 10:30 AM-5:00 PM
Room: Golden West
Organizers:
Scott Cain and Robert Buels
10:30 AM
W395
GMOD in the Cloud
Scott Cain, Ontario Institute for Cancer Research

11:10 AM
W396
URGI Plant and Fungi Platform: Distributed Resources through GMOD Tools
Joelle Amselem, INRA - URGI; Michael Alaux, INRA - URGI; Nathalie Choisne, INRA - URGI; Olivier Inizan, INRA - URGI; Nicolas Lapalu, INRA - URGI; Nacer Mohellibi, INRA - URGI; Françoise Alfama, INRA - URGI; Aminah Keliet, INRA - URGI; Erik Kimmel, INRA - URGI; Jonathan Kreplak, INRA - URGI; Claire Viseux, INRA - URGI; Mikael Loaec, INRA - URGI; Cyril Pommier, INRA - URGI; Matthias Zytnicki, INRA - MIA; Delphine Steinbach, INRA - URGI; Marc-Henri Lebrun, INRA - UMR BIOGER; Hadi Quesneville, INRA - URGI

PDF file
11:50 AM
W397
Galaxy CloudMan: A Gentle Introduction to Data Analysis on the Cloud
Dave Clements, Johns Hopkins University

12:30 PM
W398
JBrowse: A Next-Generation Genome Browser
Robert Buels, University of California, Berkeley

1:10 PM
W399
MAKER
Carson Holt, University of Utah

1:50 PM
W400
WebApollo: A Web-based Sequence Annotation Editor for Distributed Community Annotation
Robert Buels, Boyce Thompson Institute for Plant Research; Ed Lee, Lawrence Berkeley National Laboratory

2:30 PM
W401
Tripal
Lacey-Anne Sanderson, University of Saskatchewan; Stephen P. Ficklin, Washington State University

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