2179Next Generation Genome Annotation and Analysis
We have entered a world where individual investigators can afford to sequence new eukaryotic genomes. While large-scale sequencing is becoming routine, genome annotation and analysis is much less so. Many genome projects have stalled in the final stages of annotation and analysis, despite having in hand a sequenced and assembled genome. A central challenge for new genome projects is how to manage the genome annotation process and to integrate those annotations with downstream comparative genomics, expression and phenotype-genotype association studies. Highlighting a number of recent and successful genome annotation and analysis efforts, this session provides a practical introduction to annotating your new genome, and integrating the results with downstream analyses. This session will prove useful to anyone involved in a new eukaryotic genome project.
Date: Saturday, January 11, 2014
Time: 4:00 PM-6:10 PM
Room: Towne - Meeting House
4:40 PM
Genome of the Long-Living Sacred Lotus (Nelumbo nucifera Gaertn.)
Ray Ming, University of Illinois at Urbana-Champaign;
Robert VanBuren, University of Illinois at Urbana-Champaign;
Mei Yang, Wuhan Botanical Garden, China;
Yanling Liu, Wuhan Botabical Garden, China;
Michael Schatz, Cold Spring Harbor Labrotary;
Mark Yandell, Eccles Institute of Human Genetics, University of Utah;
Claude dePamphilis, Penn State University;
Andrew H. Paterson, Plant Genome Mapping Laboratory, University of Georgia;
Shaohua Li, Wuhan Botanical Garden;
Jane Shen-Miller, UCLA
5:00 PM
Introns, Ancient Transposable Elements and Gene Families Revealed in the Annotation of the Loblolly Pine (Pinus taeda L.) Megagenome
Jill Wegrzyn, University of Connecticut;
John Liechty, Department of Plant Sciences, University of California, Davis;
Kristian Stevens, Department of Evolution and Ecology, University of California, Davis;
Carol Loopstra, Texas A&M University;
Hans Vasquez-Gross, University of California Davis;
Brian Lin, University of California, Davis;
Jacob Zieve, University of California, Davis;
Pedro J Martinez-Garcia, Department of Plant Sciences University of California;
Carson Holt, University of Utah;
Mark Yandell, Eccles Institute of Human Genetics, University of Utah;
Aleksey Zimin, Institute for Physical Science and Technology, University of Maryland;
James A Yorke, University of Maryland;
Marc Crepeau, Department of Evolution and Ecology, University of California, Davis;
Daniela Puiu, Johns Hopkins University, School of Medicine;
Steven L Salzberg, Johns Hopkins University, School of Medicine;
Pieter J. deJong, Children's Hospital Oakland Research Institute;
Keithanne Mockaitis, Indiana University;
Dorrie Main, Washington State University;
Chuck Langley, University of California, Davis;
David Neale, Dept. Plant Sciences University of California Davis
