2591
Analysis of Complex Genomes

Advances in genomics continue to drive paradigm-shifting changes in science and society. In this workshop, speakers and participants will discuss advances, accomplishments, questions, opportunities and challenges in complex genome assembly, analysis, modification and manipulation.
Date: Saturday, January 10, 2015
Time: 4:00 PM-6:10 PM
Room: Town and Country
Organizers:
Hong-Bin Zhang , Boulos Chalhoub and David Stelly
4:00 PM
W014
BioNano Genome Map of a Wheat Chromosome Arm: A Tool to Support Sequence Assembly in a Complex Genome
Hana Simkova, Institute of Experimental Botany; Alex Hastie, BioNano Genomics; Helena Stankova, Institute of Experimental Botany; Jan Vrana, Institute of Experimental Botany; Marie Kubaláková, Institute of Experimental Botany; Paul Visendi, University of Brisbane; Satomi Hayashi, University of Queensland; Ming-Cheng Luo, Department of Plant Sciences, UC Davis; Jacqueline Batley, University of Queensland; David Edwards, University of Queensland; Jaroslav Dolezel, Institute of Experimental Botany

PDF file
4:20 PM
W015
The Challenges of Genomics in Polyploid Spartina Species: How to Deal with Hybrid Genomes and High Redundancy?
Armel Salmon, University of Rennes 1 - UMR CNRS 6553; Julien Boutte, University of Rennes 1 - UMR CNRS 6553; Julie Ferreira de Carvalho, University of Rennes 1 - UMR CNRS 6553; Mathieu Rousseau-Gueutin, University of Rennes 1 - UMR CNRS 6553; Malika Lily Ainouche, University of Rennes 1 - UMR CNRS 6553

4:40 PM
W016
The Molecular Mechanisms of Plant Polyploidization Revealed By Systems Analysis of the Genomes and Transcriptomes of Wheat, Cotton and Related Species
Yang Zhang, Texas A&M University; Yun-Hua Liu, Texas A&M University; Meiping Zhang, Texas A&M University; Qijun Zhang, North Dakota State University; Steven S. Xu, USDA-ARS; Wayne Smith, Texas A&M University; Steve Hague, Texas A&M University; James Frelichowski, USDA-ARS, Southern Plains Agricultural Research Center; Hong-Bin Zhang, Texas A&M University

5:00 PM
W017
Fungal Artificial Chromosome (FAC): A Novel Technology to Translate the Whole Genome Sequence Information into the Secondary Metabolome in Filamentous Fungi
Cheng-Cang Charles Wu, Intact Genomics, Inc.

5:20 PM
W018
Assessing and Validating the Amphidiploid Genome of Brassica napus using Genotyping by Sequencing
Philipp Emanuel Bayer, University of Queensland; Kenneth Chan, University of Queensland; Agnieszka Golicz, University of Queensland; Pradeep Ruperao, University of Western Australia; Paula Martinez, University of Queensland; Satomi Hayashi, University of Queensland; Yan Long, National Key Lab. of Crop Genetic Improvement, Huazhong Agricultural University; Jinling Meng, National Key Lab. of Crop Genetic Improvement, Huazhong Agricultural University; Tim Sutton, South Australian Research and Development Institute; Boulos Chalhoub, URGV-INRA; Jacqueline Batley, University of Western Australia; David Edwards, University of Western Australia

PDF file
5:40 PM
W019
A Whole Genome Sorting-Whole Genome Shotgun (WGS2) Approach for Sequencing the Allotetraploid Durum Wheat Genome
Alessia Fiore, ENEA - Italian Agency for New Technologies; Debora Giorgi, ENEA - Italian Agency for New Technologies; Patrizia Pallara, ENEA - Italian Agency for New Technologies; Marco Pietrella, ENEA - Italian Agency for New Technologies; Anna Farina, ENEA - Italian Agency for New Technologies; Elio Schijlen, Plant Research International, Wageningen University; Sergio Lucretti, ENEA - Italian Agency for New Technologies; Giovanni Giuliano, ENEA - Italian Agency for New Technologies; Gabino F. Sanchez Perez, Plant Research International, Wageningen University; Stephane Rombauts, VIB Department of Plant Systems Biology, Ghent University

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