2705
SGN Workshop: Solanaceae Genomes and Breeder Tools.

SGN (http://solgenomics.net) is a repository for whole genome sequences, genotype, genetic map, expression, and phenotype data. It integrates and cross-references diverse data to allow knowledge discovery. Crops with rich datasets on SGN include tomato, pepper, tobacco, coffee, petunia. SGN provides access to data using annotation, analysis and visualization tools such as for annotating loci, QTL and genomic selection analyses, designing Virus-Induced Gene Silencing (VIGS) constructs, and browsing genomes using JBrowse and GBrowse. The SGN code and database structure is reproducible for any crop; for example, currently it is implemented for cassava on cassavabase.org. Biologists, breeders, and bioinformaticians interested in utilizing the data and tools on our databases, and exchanging experiences, ideas and co-developing tools will benefit from attending this workshop.
Date: Tuesday, January 13, 2015
Time: 10:30 AM-12:40 PM
Room: Towne - Meeting House
Organizers:
Isaak Y. Tecle and Lukas Mueller
10:30 AM
Solcyc and metacyc


PDF file
10:50 AM
W722
Introduction
Lukas Mueller, Boyce Thompson Institute for Plant Research

10:55 AM
W723
Breeder Tools
Lukas Mueller, Boyce Thompson Institute for Plant Research

PDF file
11:15 AM
W724
solGS: A Web-Based Tool for Genomic Selection
Isaak Y. Tecle, Boyce Thompson Institute for Plant Research; Naama Menda, Boyce Thompson Institute for Plant Research; Lukas Mueller, Boyce Thompson Institute for Plant Research

PDF file
11:35 AM
W725
Accessing SGN Genomes through Tools
Susan R. Strickler, Boyce Thompson Institute for Plant Research

PDF file
11:55 AM
W726
Tomato Genome Assembly: SL2.50 and Beyond
Surya Saha, Boyce Thompson Institute, Cornell University

PDF file
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