3129
NCBI Genome Resources

This workshop provides an overview of NCBI genome resources including the Sequence Read Archive (SRA), GenBank submissions, updates to the NCBI Eukaryotic Genome Annotation pipeline including data access, Gene, and BLAST.
Date: Monday, January 11, 2016
Time: 12:50 PM-3:00 PM
Room: Sunset - Meeting House
Organizer:
Kim D. Pruitt
12:50 PM
W608
Simplified Access to SRA Genomic Data within GATK
Stephen Sherry, NIH/NLM/NCBI

PDF file
1:10 PM
W609
The NCBI Transcriptome Shotgun Assembly (TSA) Database
Susan Schafer, NIH/NLM/NCBI

PDF file
1:30 PM
W610
Using GFF for Genome Annotation Submissions to GenBank
Terence D. Murphy, National Center for Biotechnology Information, NLM, NIH; Karen Clark, National Center for Biotechnology Information, NLM, NIH; Frank Ludwig, National Center for Biotechnology Information, NLM, NIH; Vincent Calhoun, National Center for Biotechnology Information, NLM, NIH; Sergiy Gotvyanskyy, National Center for Biotechnology Information, NLM, NIH; Colleen Bollin, National Center for Biotechnology Information, NLM, NIH

1:45 PM
W611
Recent Updates in the Eukaryotic Genome Annotation Pipeline
Francoise Thibaud-Nissen, National Center for Biotechnology Information (NCBI/NLM/NIH); the Eukaryotic Genome Annotation Team, NCBI/NLM/NIH

2:05 PM
W612
Gene: Your Portal into NCBI's Eukaryotic Genome Annotations
Terence D. Murphy, National Center for Biotechnology Information, NLM, NIH

2:25 PM
W613
Genomic Data Access Through BLAST
Tao Tao, NIH/NLM/NCBI

PDF file
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