Computer Demo 1

Talks and demonstrations about software and online resources for supporting and advancing research.
Date: Saturday, January 9, 2016
Time: 1:30 PM-3:40 PM
Room: California
Organizers:
Dave Clements and Brian Smith-White
1:30 PM
C01
NCBI Variation Portal: Databases and Tools for Genetic Variation Discovery, Analysis, and Interpretation
Lon Phan, NIH/NLM/NCBI

1:50 PM
C02
Increasing Discoverability and Connectivity of Scientific Media through Annotation with iCLiKVAL
Todd D. Taylor, RIKEN Center for Integrative Medical Sciences; Naveen Kumar, RIKEN Center for Integrative Medical Sciences

PDF file
2:10 PM
C03
DBCLS SRA: Functional Characterization of Public NGS Data
Takeru Nakazato, Database Center for Life Science; Tazro Ohta, Database Center for Life Science; Hidemasa Bono, Database Center for Life Science

PDF file
2:30 PM
C04
Publicly Available Resources for Plant Genomics Research at the Arabidopsis Information Resource (TAIR).
Leonore Reiser, Phoenix Bioinformatics

2:50 PM
C05
TENOR: Database for Comprehensive mRNA-Seq Experiments in Rice
Yoshihiro Kawahara, National Institute of Agrobiological Sciences; Youko Oono, National Institute of Agrobiological Sciences; Hironobu Wakimoto, National Institute of Agrobiological Sciences; Jun Ogata, National Institute of Agrobiological Sciences; Hiroyuki Kanamori, National Institute of Agrobiological Sciences; Harumi Sasaki, National Institute of Agrobiological Sciences; Satomi Mori, National Institute of Agrobiological Sciences; Takashi Matsumoto, National Institute of Agrobiological Sciences; Takeshi Itoh, National Institute of Agrobiological Sciences

3:10 PM
C06
Use of KitBase to Facilitate Forward and Reverse Genetics Research in Rice
Rashmi Jain, UC Davis/JBEI; Guotian Li, UC-Davis; Mawsheng Chern, UC Davis/JBEI; Nhan T. Pham, UC-Davis; Joel Martin, DOE Joint Genome Institute; Wendy Schackwitz, DOE Joint Genome Institute; Anna Lipzen, DOE Joint Genome Institute; Jeremy Schmutz, HudsonAlpha Institute for Biotechnology; Kerrie W. Barry, DOE Joint Genome Institute; Pamela Ronald, Joint BioEnergy Institute (JBEI)

3:30 PM
C07
TreeGenes and CartograTree: Community Resources for Forest Tree Genomics
Steven A Demurjian Jr, University of Connecticut; Emily Grau, Department of Plant Sciences, University of California, Davis; Hans Vasquez-Gross, University of California Davis; Damian Gessler, University of Arizona; David Neale, Dept. Plant Sciences University of California Davis; Jill Wegrzyn, Department of Ecology and Evolutionary Biology, University of Connecticut

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