38
Genome Mapping, Tagging & Characterization: Forest Trees

P1169
Does Douglas-fir Celebrate the Solstice?  Circadian and Circannual Cycles of Gene Expression Variation in Douglas-fir Needles
Peter Dolan, University of Minnesota, Morris; Richard Cronn, USDA Forest Service Pacific Northwest Research Station; Sanjuro Jogdeo, Oregon State University; Dee Denver, Oregon State University; Brad St Clair, USDA Forest Service Pacific Northwest Research Station; Jill Wegrzyn, University of Connecticut

P1170
Elucidation of Transposable Elements in Conifers and Their Effect on Conifer Evolution
Robin Paul, Department of Ecology and Evolutionary Biology, University of Connecticut

P1171
Genome-Wide Identification and Profiling of Novel and Conserved Mirnas during Formation of an Epigenetic Memory in Norway Spruce Embryos
Igor Yakovlev, Norwegian Institute of Bioeconomy Research; Adam Vivian-Smith, Norwegian Institute of Bioeconomy Research; Carl Gunnar Fossdal, Norwegian Institute of Bioeconomy Research

P1172
Genomic Selection in Tree Breeding: Prediction Accuracy in a White Spruce Diallel Mating Design
Marie Deslauriers, Natural Resources Canada, Canadian Wood Fibre Centre; Patrick Lenz, Natural Resources Canada, Canadian Wood Fibre Centre; Yill Sung Park, Natural Resources Canada, Canadian Wood Fibre Centre; Sylvie Blais, Université Laval, Canada Research Chair in Forest and Environmental Genomics; Jean Bousquet, Université Laval, Canada Research Chair in Forest and Environmental Genomics; Jean Beaulieu, Natural Resources Canada, Canadian Wood Fibre Centre

P1173
Mediterranean Firs: A Complete Next-Generation Sequencing Phylogeny
Anass Terrab Benjelloun, University of Seville; Francisco Balao, University of Seville; M Teresa Lorenzo Romero, University of Seville; Jose Manuel Sánchez, University of Seville; Juan Luis García-Castaño, University of Seville

P1174
Construction of a High-Density Genetic Linkage Map using Axiom Genotyping and Identification of QTLs for Wood Property, Growth and Male Flower Formation in Japanese Cedar (Cryptomeria japonica)
Kentaro Mishima, Forest Tree Breeding Center, FFPRI; Tomonori Hirao, Forest Bio-Research Center, FFPRI; Taiichi Iki, Tohoku Breeding Office for FTBC, Forestry and Forest Products Research Institute; Yuichiro Hiraoka, Forest Tree Breeding Center, FFPRI; Miyoko Fukatsu-Tsubomura, Forest Tree Breeding Center, Forestry and Forest Products Research Institute; Miho Tamura, Faculty of Agriculture, Kyushu University; Makoto Takahashi, Forest Tree Breeding Center, FFPRI; Hiroshi Hoshi, Forest Tree Breeding Center, Forestry and Forest Products Research Institute; Atsushi Watanabe, Faculty of Agriculture, Kyushu University

P1175
Exome Genotyping and Association Genetics of Environmental Adaptation and Stress Mitigation Traits in a Clonally Tested Loblolly Pine (Pinus taeda L.) Population
Mengmeng Lu, Texas A&M University; Konstantin V. Krutovsky, Georg-August-University of Göttingen; C. Dana Nelson, Southern Institute of Forest Genetics, US Forest Service SRS; Tomasz Koralewski, Texas A&M University; Tom D. Byram, Texas A&M Forest Service/Texas A&M University; Carol Loopstra, Texas A&M University

P1176
Assembling and Comparing Two Ash Tree Genomes: Coping with Heterozygosity on Non-Model Organism WGS
Bernardo Clavijo, The Genome Analysis Centre; Gonzalo Garcia, The Genome Analysis Centre; Jonathan M Wright, The Genome Analysis Centre; Darren Heavens, The Genome Analysis Centre; Matt Clark, The Genome Analysis Centre; Federica Di-Palma, The Genome Analysis Centre

P1177
Targeted-Capture Sequencing in Whitebark Pine Reveals Range-Wide Demographic and Adaptive Patterns Despite Challenges of a Large, Repetitive Genome
John V. Syring, Linfield College; Jacob A. Tennessen, Oregon State University; Tara N. Jennings, Oregon State University; Camille Scelfo-Dalbey, Linfield College; Richard Cronn, USDA Forest Service Pacific Northwest Research Station

P1178
QTL Mapping of Pine Wood Nematode (PWN) Resistance in Pinus thunbergii
Tomonori Hirao, Forest Bio-Research Center, FFPRI; Koji Matsunaga, Kyushu Breeding Office for FTBC; Kentaro Mishima, Forest Tree Breeding Center, FFPRI; Atsushi Watanabe, Faculty of Agriculture, Kyushu University

P1179
Signatures of Selection Among de novo Assembled Transcriptomes of Four White Pine Species
U. Uzay Sezen, Department of Ecology and Evolutionary Biology, University of Connecticut

P1180
Establishment of Genomic Resources Aiming at Accelerating Advanced-Generation Tree Breeding By Molecular Breeding in Japanese Cedar (Cryptomeria japonica D. Don)
Makoto Takahashi, Forest Tree Breeding Center, FFPRI; Yuichiro Hiraoka, Forest Tree Breeding Center, FFPRI; Manabu Kurita, Kyushu Regional Breeding Office, Forest Tree Breeding Center, FFPRI; Kentaro Mishima, Forest Tree Breeding Center, FFPRI; Tomonori Hirao, Forest Bio-Research Center, FFPRI; Taiichi Iki, Tohoku Regional Breeding Office, Forest Tree Breeding Center, FFPRI; Miho Tamura, Faculty of Agriculture, Kyushu University; Eitaro Fukatsu, Kyushu Regional Breeding Office, Forest Tree Breeding Center, FFPRI; Mine Nose, Forest Tree Breeding Center, FFPRI; Miyoko Fukatsu-Tsubomura, Forest Tree Breeding Center, FFPRI; Mineko Ohira, Forest Tree Breeding Center, FFPRI; Yuya Takashima, Forest Tree Breeding Center, FFPRI; Taro Yamanobe, Forest Tree Breeding Center, FFPRI; Noritsugu Kuramoto, Kyushu Regional Breeding Office, Forest Tree Breeding Center, FFPRI; Masahiro Miura, Kansai Regional Breeding Office, Forest Tree Breeding Center, FFPRI; Osamu Chigira, Iriomote Tropical Forest Breeding Technical Garden, Forest Tree Breeding Center, FFPRI; Hiroshi Hoshi, Forest Tree Breeding Center, FFPRI; Atsushi Watanabe, Faculty of Agriculture, Kyushu University

P1181
Population Genetics of Silver Birch
Jarkko T Salojärvi, University of Helsinki

P1182
Genome Map for Quaking Aspen (Populus tremuloides) using the BioNano Genomics Irys System
Lindsay Chaney, Brigham Young University; Josh Udall, Brigham Young University

P1183
Genetic Containment of Forest Trees By RNAi Suppression of LEAFY
Amy Leigh Klocko, Oregon State University; Amy Brunner, Department of Forest Resources and Environmental Conservation, Virginia Tech; Jian Huang, University of Wisconsin-Milwaukee; Richard Meilan, Purdue University; Haiwei Lu, Oregon State University; Cathleen Ma, Oregon State University; Alice Morel, Oregon State University; Dazhong Zhao, University of Wisconsin-Milwaukee; Kori Ault, Oregon State University; Michael Dow, Oregon State University; Olga Shevchenko, Oregon State University; Steven Strauss, Oregon State University

P1184
Toward Higher Resolution Co-Expression Networks of Wood Developing Tissues through Data Integration
Matthew S. Zinkgraf, US Forest Service; Lijun Liu, US Forest Service; Trevor Ramsay, UC Davis; Andrew T. Groover, US Forest Service; Vladimir Filkov, UC Davis

P1185
Extensive Transcriptome Changes during Natural Onset and Release of Vegetative Bud Dormancy in Populus
Haiwei Lu, Oregon State University; Glenn T. Howe, Oregon State University; David P. Horvath, USDA-ARS; Palitha Dharmawardhana, Department of Botany & Plant Pathology, Oregon State University; Henry D. Priest, Donald Danforth Plant Science Center; Todd C. Mockler, Donald Danforth Plant Science Center; Steven H. Strauss, Oregon State University

P1186
Predictive Ability of Genomic Estimated Family Values (GEFV)
Esteban Rios, University of Florida, Agronomy Department; Marcio Resende, RAPiD Genomics LLC; Matias Kirst, University of Florida; Marcos D.V. Resende, EMBRAPA - sucursal; Patricio R. Munoz, University of Florida, Agronomy Department

P1187
Modest Frequency and Pleiotropic Impacts of Zinc-Finger Mutagenesis in Poplar
Haiwei Lu, Oregon State University; Amy Leigh Klocko, Oregon State University; Michael Dow, Oregon State University; Cathleen Ma, Oregon State University; Vindhya Amarasinghe, Oregon State University; Steven H. Strauss, Oregon State University

P1188
High incidence of biallelic mutation of floral genes in CRISPR/Cas9 transgenic poplars
Estefania Elorriaga, Oregon State University; Amy Leigh Klocko, Oregon State University; Cathleen Ma, Oregon State University; Steven Strauss, Oregon State University

P1189
Differential Intron Retention Is a Key Event of Alternative Splicing-Driven Transcriptome Adaptation to Environmental Stresses in Populus trichocarpa
Sergei Filichkin, Oregon State University; Michael Hamilton, Colorado State University; Palitha Dharmawardhana, Department of Botany & Plant Pathology, Oregon State University; Anireddy S. Reddy, Colorado State University; Asa Ben-Hur, Colorado State University; Pankaj Jaiswal, Department of Botany & Plant Pathology, Oregon State University

P1190
Alternative Splicing in Wood Formation of Populus trichocarpa
Ying-Hsuan Sun, Department of Forestry, National Chung Hsing University; Hsu-Cheng Hsueh, Department of Forestry, National Chung Hsing University; Ying-Chung Lin, North Carolina State University; Vincent Chiang, North Carolina State University

P1191
A Comprehensive lincRNA Analysis: From Conifers to Trees
Nicolas Delhomme, Umeå Plant Science Centre, Umeå University; Bastian Schiffthaler, Umeå Plant Science Centre, Umeå University; Katja Stojkovic, Umeå Plant Science Center; Yao-Cheng Lin, VIB - Ghent University; Nathaniel R. Street, Umeå Plant Science Centre, Umeå University

P1193
Genetic Diversity Pattern of Salix alba Populations in a Fragmented  River Ecosystem in Eastern Mediterranean
Funda Ö Degirmenci, Department of Biological Sciences, Middle East Technical University; Pelin Acar, Department of Biological Sciences, Middle East Technical University; Zeki Kaya, Department of Biological Sciences, Middle East Technical University

P1194
Phylogenetic Analysis of the Turkish Salix Species Based on Sequence Data from Chloroplast matK and nuclear ITS Regions
Pelin Acar, Department of Biological Sciences, Middle East Technical University; Funda Ö Degirmenci, Department of Biological Sciences, Middle East Technical University; Zeki Kaya, Department of Biological Sciences, Middle East Technical University

P1195
High-Resolution Mapping of Biomass-Related Traits in Shrub Willow (Salix purpurea L.)
Craig H. Carlson, Cornell University; Fred E. Gouker, Cornell University; Stephen DiFazio, West Virginia University; Ran Zhou, West Virginia University; Lawrence Smart, Cornell University

P1196
A High Density Genetic Linkage Map for Northern Red Oak (Quercus rubra L.)
Arpita Konar, University of Notre Dame, Indiana, USA

P1197
RNAi Suppression of Two AGAMOUS Homologs in Sweetgum (Liquidambar) Impairs Male and Female Reproductive Development Under Field Conditions
Amy Leigh Klocko, Oregon State University; Kori Ault, Oregon State University; Cathleen Ma, Oregon State University; Steven Strauss, Oregon State University

P1198
Association Mapping of Beech Bark Disease in American Beech
Irina Calic, University of California, Davis

P1199
Genomic Prediction and Linkage Disequilibrium in Eucalyptus benthamii and Eucalyptus pellita using a 60K SNPs Chip (EUChip60K)
Bárbara S. F. Müller, University of Brasília - EMBRAPA; Leandro G Neves, RAPiD Genomics LLC; Marcio Resende, RAPiD Genomics LLC; Annette M. Fahrenkrog, University of Florida; Janeo Almeida Filho, University of Florida; Patricio R. Munoz, University of Florida, Agronomy Department; Matias Kirst, University of Florida; Dario Grattapaglia, Plant Genetics Lab - EMBRAPA Genetic Resources & Biotechnology

P1200
Transcriptome Assembly and Differentially Expressed Genes Between Males and Females in Carpotroche brasiliensis
Flora Bittencourt Lima, State University of Santa Cruz; Bárbara S. F. Müller, University of Brasília - EMBRAPA; Fabienne Micheli, Universidade Estadual de Santa Cruz (UESC); Christopher Dervinis, University of Florida; Annette M. Fahrenkrog, University of Florida; Matias Kirst, University of Florida; Fernanda Amato Gaiotto, State University of Santa Cruz

P1201
Tropical Tree Genomics Reveals Fragmentation of the African Rainforest during the Ice Ages
Rosalía Piñeiro, Royal Botanic Gardens, Kew

P1202
Genomic Selection for New Zealand Forestry
Natalie Graham, Scion; Emily J. Telfer, Scion; Phillip Wilcox, University of Otago; Yongjun Li, Scion; Mari Suontama, Scion; Mitchell Murray, University of Waikato; Lucy Macdonald, Scion; Wei-Young Wang, PF Olsen Limited; Heidi Dungey, Scion

P1203
Gene and SNP Discovery in Taiwania cryptomerioides by RNA-seq
Ying-Hsuan Sun, Department of Forestry, National Chung Hsing University; Shin-Hung Pan, Department of Forestry, National Chung Hsing University; Fang-Hua Chu, School of Forestry and Resource Conservation, National Taiwan University; Jeng-Der Chung, Division of Silviculture, Taiwan Forestry Research Institute

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