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Genome Mapping, Tagging & Characterization: Poultry

Identifying Tissue Specific Long Noncoding RNAs in the Chicken Genome
Susan Margaret Waters, University of California, Davis; Kelly Chanthavixay, University of California, Davis; Colin Kern, Univeristy of California, Davis; Perot Saelao, University of California, Davis; Ying Wang, University of California, Davis; James L. Chitwood, Animal Science, University of California; Pablo J. Ross, Animal Science, University of California Davis; Huaijun Zhou, University of California, Davis

Gallus gallus Data at NCBI: From Genome Annotation to Gene Curation
Kim D. Pruitt, National Center for Biotechnology Information (NCBI/NLM/NIH); David Webb, National Center for Biotechnology Information (NCBI/NLM/NIH); Terence D. Murphy, National Center for Biotechnology Information, NLM, NIH; Francoise Thibaud-Nissen, National Center for Biotechnology Information (NCBI/NLM/NIH)

Detection of Recent Selection Signatures in Commercial Broiler Chickens
Weixuan Fu, Department of Animal Science, University of Delaware; William Lee, Maple Leaf Farms; Behnam Abasht, Department of Animal Science, University of Delaware

Transcriptomic Investigation of Genomic Imprinting in Chicken Embryonic Brain and Liver
Zhu Zhuo, Department of Animal Science, University of Delaware; Susan J. Lamont, Iowa State University; Behnam Abasht, Department of Animal Science, University of Delaware

Transcriptomic Comparison of Cardiac Tissue at Day 6 and Day 21 Posthatch Between Two Broiler Chicken Lines
Amanda M. Wagner, University of Delaware; Susan J. Lamont, Iowa State University; Chris Ashwell, North Carolina State University; Michael E. Persia, Virginia Polytechnic and State University; Carl J. Schmidt, University of Delaware; Max F. Rothschild, Iowa State University

Identification of CNVs on the Genome of Brazilian Chicken Lines
Thais Fernanda Godoy, University of São Paulo/ESALQ; Gabriel C M Moreira, University of São Paulo/ESALQ; Vinicius H. Silva, University of São Paulo/ESALQ; Clarissa Boschiero, University of São Paulo/ESALQ; Monica Correa Ledur, Embrapa Swine and Poultry; Ana Silvia Alves M. T. Moura, São Paulo State University/FMVZ; Luiz L. Coutinho, University of São Paulo/ESALQ

Genome-Wide Association Studies Reveal Genomic Windows and Candidate Genes Related to Fat Deposition in Chickens
Gabriel C M Moreira, University of São Paulo/ESALQ; Aline S.M. Cesar, University of São Paulo/ESALQ and Iowa State University; Thaís Fernanda Godoy, University of São Paulo/ESALQ; Clarissa Boschiero, University of São Paulo/ESALQ; Monica Correa Ledur, Embrapa Swine and Poultry; Dorian J. Garrick, Department of Animal Science, Iowa State University; Ana Silvia Alves M. T. Moura, São Paulo State University/FMVZ; Luiz L. Coutinho, University of São Paulo/ESALQ

Transcriptome Analysis of Alligator Adipose in Comparison to Chicken Adipose
Blair Kathleen Schneider, University of Delaware; Colin Kern, Univeristy of California, Davis; Allen Hubbard, University of Delaware; Wayne Treible, University of Delaware; John W. Finger Jr., Environmental Health Science and Interdisciplinary Toxicology Program, University of Georgia; Tracey Tuberville, University of Georgia's Savannah River Ecology Laboratory; Travis C. Glenn, Department of Environmental Health Science & Interdisciplinary Toxicology Program, University of Georgia; Matt Hamilton, University of Georgia's Savannah River Ecology Laboratory; Carl J. Schmidt, University of Delaware

Integrating Quantitative Genetic and Genomic Approaches to Dissect Fatness Traits in Divergently Selected Broiler Chickens
Choon Kiat Khoo, The Roslin Institute; Almas A. Gheyas, The Roslin Institute, University of Edinburgh; Lel Eory, Roslin Institute University of Edinburgh; Paul M. Hocking, The Roslin Institute, The University of Edinburgh; David W. Burt, Roslin Institute Univ of Edinburgh

Understanding the Functional Consequence of Selectively Constrained Regions of the Chicken Genome
Lel Eory, Roslin Institute University of Edinburgh; Alan L. Archibald, The Roslin Institute and R(D)SVS, University of Edinburgh; Paul Flicek, EMBL-European Bioinformatics Institute; David W. Burt, Roslin Institute Univ of Edinburgh

Molecular Mechanisms Associated with Dietary Methionine Deficiency in Meat-Type Chickens
Samuel E. Aggrey, University of Georgia; Fernando Gonzalez-Ceron, University of Georgia; Romdhane Rekaya, University of Georgia

Segmental Duplications in the Chicken Genome Identified By Single Nucleotide Variant (SNV) Analysis in Two Inbred Lines
Damarius Fleming, Iowa State University; Susan J. Lamont, Iowa State University; Janet E. Fulton, Hy-Line International; James M. Reecy, Iowa State University; Ashlee Lund, Hy-line

Inducible Overexpression and Targeted Genome Editing of Chicken IRF7 in DF-1 Cell Line
Tae Hyun Kim, University of California, Davis; Catherine Lopez, University of California, Davis; Ying Wang, University of California, Davis; Huaijun Zhou, University of California, Davis

Characterization of Chicken Cecal Microbiome During Acute and Chronic Heat Stress
John Hsieh, Iowa State University; Nathaniel Barrett, Virginia Polytechnic and State University; Torey Looft, National Animal Disease Center; Michael E. Persia, Virginia Polytechnic and State University; Carl J. Schmidt, University of Delaware; Susan J. Lamont, Iowa State University

Comparison of Gene Expression Profiles of Pituitary Glands from Heat Stressed and Non-Heat Stressed Broiler Chickens
Elizabeth M. Pritchett, University of Delaware; Susan J. Lamont, Iowa State University; Carl J. Schmidt, University of Delaware

Distinct Cardiac Responses to Heat Stress Between Two Broiler Lines Identified By Transcriptome Analysis
Jibin Zhang, Iowa State University; Carl J. Schmidt, University of Delaware; Susan J. Lamont, Iowa State University

Transcriptomic Analysis of Heat Stress Response in the Liver of Broiler Chickens
Sara F. Jastrebski, University of Delaware; Susan J. Lamont, Iowa State University; Michael E. Persia, Virginia Polytechnic and State University; Max F. Rothschild, Iowa State University; Chris M. Ashwell, North Carolina State University; Carl J. Schmidt, University of Delaware

Liver Transcriptome Response to Hyperthermia Stress in Three Distinct Chicken Lines
Xi Lan, Iowa State University; Carl J. Schmidt, University of Delaware; Susan J. Lamont, Iowa State University

Unique Genetic Responses Revealed in RNA-Seq from the Spleen of Chickens Stimulated with Lipopolysaccharide and Heat
Angelica Van Goor, Iowa State University; Chris Ashwell, North Carolina State University; Mike E. Persia, Virginia Polytechnic Institute and State University; Max F. Rothschild, Iowa State University; Carl J. Schmidt, University of Delaware; Susan J. Lamont, Iowa State University

Genetic Parameter Estimation and Genome Wide Association Study for NDV Response in Chickens
Kaylee Rowland, Iowa State University; Huaijun Zhou, University of California, Davis; Rodrigo Gallardo, University of California, Davis; David A. Bunn, UC Davis; Susan J. Lamont, Iowa State University

Transcriptional Analysis of JAK/STAT Signaling Pathway Involved Immune Genes to Necrotic Enteritis Afflicted Chicken Lines
Yeong Ho Hong, Chung-Ang University; Anh D. Truong, Chung-Ang University; Yeojin Hong, Chung-Ang University; Boyeong Park, Chung-Ang University; Jihye Ban, Chung-Ang University; Cong T. Hoang, Chung-Ang University; Hans Cheng, USDA-ARS, Avian Disease and Oncology Laboratory; Hyun S. Lillehoj, USDA-ARS

The Conservation and Signatures of lincRNAs in Marek’s Disease of Chicken
Jiuzhou Song, University of Maryland; Yanghua He, University of Maryland; Huanmin Zhang, USDA ARS Avian Disease & Oncology Laboratory; Ning Yang, China Agricultural University

Understanding the First Effective Vaccination Against a Cancer: Interactions of Marek’s Disease Virus and Vaccines with the Host Genome
Marla McPherson, Dept. of Animal Science, University of California; Mary Delany, University of California

Genome-Wide Identification of Regions Associated with Heat-Tolerance and Newcastle Disease Virus Resistance in Chickens
Perot Saelao, University of California, Davis; Ying Wang, UC Davis; Kelly Chanthavixay, University of California Davis; Ali Nazmi, UC Davis; Rodrigo Gallardo, University of California, Davis; David A. Bunn, UC Davis; Susan J. Lamont, Iowa State University; Huaijun Zhou, University of California, Davis

Differential Response of Resistant and Susceptible Chicken Lines to Newcastle Disease Virus in the Trachea and Lung
Melissa Herrmann, Department of Animal Science, Iowa State University; Rodrigo Gallardo, University of California, Davis; David A. Bunn, UC Davis; Huaijun Zhou, University of California, Davis; Susan J. Lamont, Iowa State University

Effect of Sex on Newcastle Disease Virus (NDV) Titer after Infection in Chickens
Kelly Chanthavixay, University of California Davis; Perot Saelao, UC Davis; Ying Wang, UC Davis; Anthony Medvedev, UC Davis; Vivian Yu, UC Davis; Rodrigo Gallardo, University of California, Davis; David A. Bunn, UC Davis; Susan J. Lamont, Iowa State University; Huaijun Zhou, University of California, Davis

Investigating Host Resistance to Avian Pathogenic Escherichia coli Using Colonization Levels in a Chicken Advanced Intercross Line
Melissa S. Monson, Iowa State University; Michael G. Kaiser, Iowa State University; Susan J. Lamont, Iowa State University

Salmonella Enterica Serovars Enteritidis Infection Alters the Indigenous Microbiota Diversity in Young Layer Chicks 
Khin Khine Zar Mon, University of California, Davis; Perot Saelao, University of California, Davis; Michelle M. Halstead, University of California, Davis; Kelly Chanthavixay, University of California Davis; Huai-Chen Chang, University of California, Davis; Lydia Garas, University of California, Davis; Elizabeth A. Maga, University of California, Davis; Huaijun Zhou, University of California, Davis

Candidate miRNAs Involved in Regulation of Alpha-class Glutathione S-transferases Associated with Susceptibility to the Carcinogen Aflatoxin B1
Aaron M. Duffy, Utah State University; Kristelle M. Mendoza, University of Minnesota; Kent M. Reed, University of Minnesota; Roger A. Coulombe, Utah State University

Effects of SNPs in the MLF2 Gene Related Coccidiosis Resistance on Egg Production and Body Weight in Korean Chickens
So-Young Choi, Kangwon National Uinv. Korea; Yeong Ho Hong, Chung-Ang University; Sung-Jin Lee, Kangwon National University

Genetics of Dilated Cardiomyopathy in the Turkey
Edward Smith, Virginia Tech; Kwaku Gyenai, Virginia Tech

Transgenerational Effects of Modifications of the Embryonic Environment in Quail
Sophie Leroux, UMR INRA/INPT ENSAT/INPT ENVT - GenPhySE; David Gourichon, INRA - PEAT; Christine Leterrier, UMR INRA/CNRS/UFR Tours/IFCE - PRC; Yann Labrune, UMR INRA/INPT ENSAT/INPT ENVT - GenPhySE; Vincent Coustham, UR83 Recherches Avicoles; Tatiana Zerjal, INRA, UMR de Génétique Animale et Biologie Intégrative; Jean Luc Coville, INRA, UMR de Génétique Animale et Biologie Intégrative; Mireille Morisson, UMR INRA/INPT ENSAT/INPT ENVT - GenPhySE; Francis Minvielle, INRA, UMR de Génétique Animale et Biologie Intégrative; Frédérique Pitel, UMR INRA/INPT ENSAT/INPT ENVT - GenPhySE

Identification of Tissue-Specific Long Non-Coding RNAs in Three Livestock Species
Colin Kern, Univeristy of California, Davis; Pablo J. Ross, Animal Science, University of California Davis; Perot Saelao, University of California, Davis; Ying Wang, University of California, Davis; Michelle M. Halstead, University of California, Davis; James L. Chitwood, Animal Science, University of California; Ian Korf, The Genome Center, University of California, Davis; Mary Delany, University of California; Juan F. Medrano, University of California-Davis; Hans Cheng, USDA, ARS, ADOL; Alison Van Eenennaam, University of California, Davis; Christopher K. Tuggle, Iowa State University; Catherine W. Ernst, Department of Animal Science, Michigan State University; Huaijun Zhou, University of California, Davis

Genome-wide Functional Annotation of Regulatory Elements in Livestock Species
Huaijun Zhou, University of California, Davis; Pablo J. Ross, Animal Science, University of California Davis; Colin Kern, Univeristy of California, Davis; Perot Saelao, University of California, Davis; Ying Wang, University of California, Davis; Michelle M. Halstead, University of California, Davis; James L. Chitwood, Animal Science, University of California; Tae Hyun Kim, University of California, Davis; Ian Korf, The Genome Center, University of California, Davis; Mary Delany, University of California; Hans Cheng, USDA, ARS, ADOL; Juan F. Medrano, University of California-Davis; Alison Van Eenennaam, University of California, Davis; Christopher K. Tuggle, Iowa State University; Catherine W. Ernst, Department of Animal Science, Michigan State University

Phytase Effect on Broiler Performance and Gene Expression
Eduardo M C Lima, University of Delaware; Paulo Borges Rodrigues, University of Lavras; Carl J. Schmidt, University of Delaware

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