39
Genome Mapping, Tagging & Characterization: Poultry

P1114
Given the Continued Intense Interest in and Need for Improvement of the Chicken Genome Reference (Gallus_gallus-5.0) We Have Built a New Preliminary Version of the Chicken Genome (Temporarily Termed Gallus_gallus-6.0) Using Single Molecule Real-Time Tech
Wesley Warren, Washington University School of Medicine-McDonnell Genome Institute

P1115
The Open Chromatin Landscape of the Chicken Genome
Colin Kern, University of California, Davis; Perot Saelao, University of California, Davis; Ying Wang, University of California, Davis; James L. Chitwood, Animal Science, University of California; Ian Korf, The Genome Center, University of California, Davis; Mary E. Delany, Animal Science, University of California; Hans Cheng, USDA, ARS, ADOL; Pablo J. Ross, Animal Science, University of California Davis; Huaijun Zhou, University of California, Davis

P1116
Insight to Feralization from Genomes and Social Media
Eben Gering, Michigan State University; Martin Johnsson, Linköping University; Dominic Wright, Linköping University; Levi Storks, Michigan State University; Thomas Getty, Michigan State University

P1117
Chicken Annotation in Ensembl
Thibaut Hourlier, European Molecular Biology Laboratory - EBI; Konstantinos Billis, European Molecular Biology Laboratory - EBI; Carlos García Girón, European Molecular Biology Laboratory - EBI; Daniel N. Murphy, European Molecular Biology Laboratory - EBI; Rishi Nag, European Molecular Biology Laboratory - EBI; Fergal J. Martin, European Molecular Biology Laboratory - EBI; Bronwen Aken, European Molecular Biology Laboratory - EBI; Paul Flicek, European Molecular Biology Laboratory - EBI

P1118
Runs of Homozygosity in a Broiler Chicken Reference Population
Gabriel C. M. Moreira, University of Sao Paulo / Iowa State University; Thaís Fernanda Godoy, University of São Paulo/ESALQ; Clarissa Boschiero, University of São Paulo/ESALQ; Mauricio Egidio Cantao, Embrapa Swine and Poultry; Monica Correa Ledur, Embrapa Swine and Poultry; James M. Reecy, Department of Animal Science, Iowa State University; Ana Silvia Alves M. T. Moura, São Paulo State University/FMVZ; Luiz L. Coutinho, University of São Paulo/ESALQ

P1119
RNA-Seq Analysis of Heterosis Using Chicken Hybrids and Inbred Parental Lines
Zhu Zhuo, Department of Animal and Food Sciences, University of Delaware; Behnam Abasht, University of Delaware; Susan J. Lamont, Iowa State University, Department of Animal Science

P1120
Disentangling Genetic Exchanges Between Gallus gallus and Gallus sonneratii in Order to Better Understand the Domestication of Chickens
Marie Suez, MAIAGE, INRA; Mahendra Mariadassou, MAIAGE, INRA; Pierre Nicolas, MAIAGE, INRA; Diane Esquerré, INRA GeT-PlaGe Genomics Facility - GenPhySe; Alain Vignal, GenPhySe, INRA, ENVT, ENSAT; Frédéric Hospital, GABI, INRA, AgroParisTech, Université Paris-Saclay; Xavier Rognon, GABI, AgroParisTech, INRA, Université Paris-Saclay; Agathe Vieaud, GABI, INRA, AgroParisTech, Université Paris-Saclay; Tatiana Zerjal, GABI, INRA, AgroParisTech, Université Paris-Saclay; Michèle Tixier-Boichard, GABI, INRA, AgroParisTech, Université Paris-Saclay

P1121
RNA-Seq Analysis of Chicken Primordial Germ Cells (PGCs) for Identification of Sexually Dimorphic Gene Expression and Downstream Metabolic Pathways
Sohita Ojha, University of Arkansas; Nhung Nguyen, Baylor college of Medicine; David P. Froman, Oregon State University; Carl J. Schmidt, University of Delaware; Douglas D. Rhoads, University of Arkansas, Cell and Molecular Biology Program

P1122
Allele-Specific Expression Analysis Does Not Support Sex Chromosome Inactivation on the Chicken Z Chromosome
Qiong Wang, Department of Animal Genetics and Breeding, National Engineering Laboratory for Animal Breeding, College of Animal Science and Technology, China Agricultural University; Judith E. Mank, University College London, Department of Genetics, Evolution and Environment; Lujiang Qu, Department of Animal Genetics and Breeding, National Engineering Laboratory for Animal Breeding, College of Animal Science and Technology, China Agricultural University

P1123
Distribution of Kinases in Chicken Tissue
Bindu Nanduri, Mississippi State University; Sedona Koenders, University of Florida; Mariola J Edelmann, University of Florida

P1124
Multi-Trait Genome-Wide Association Studies Identifies Genetic Variants and Candidate Genes for Longitudinal Body Weights in Chicken
Congjiao Sun, China Agricultural University; Guiyun Xu, China Agricultural University; Ning Yang, China Agricultural University

P1125
Sequence Imputation in One Genomic Window Reveals Putative Candidate Genes for Abdominal Fat in Chickens
Gabriel C. M. Moreira, University of Sao Paulo / Iowa State University; Thaís Fernanda Godoy, University of São Paulo/ESALQ; Clarissa Boschiero, University of São Paulo/ESALQ; Aline S.M. Cesar, University of São Paulo/ESALQ and Iowa State University; Ana Silvia Alves M. T. Moura, São Paulo State University/FMVZ; Dorian J. Garrick, Department of Animal Science, Iowa State University; James M. Reecy, Department of Animal Science, Iowa State University; Monica Correa Ledur, Embrapa Swine and Poultry; Luiz L. Coutinho, University of São Paulo/ESALQ

P1126
Identification of Copy Number Variations Associated with Ascites Phenotype in Broilers
Alia Parveen, University of Arkansas, Cell and Molecular Biology Program; Byung-Whi Kong, University of Arkansas; Douglas D. Rhoads, University of Arkansas, Cell and Molecular Biology Program

P1127
Looking at the Genetic Structure of Mexican Chicken Population
Maria G. Strillacci, Università degli Studi Milano - Dept. DiMeVet; Maria C. Cozzi, Università degli Studi Milano - Dept. DiMeVet; Vicente Murillo Vega Eliezer, INIFAP; Silvia Cerolini, Università degli Studi di Milano - DIMEVET; Román Ponce Sergio Ivan, CENID FyMA INIFAP; Felipe de Jesús Ruiz, CENID FyMA INIFAP; Alessandro Bagnato, Università degli Studi Milano - Dept. DiMeVet

P1128
Genomic Variability in Mexican Chicken Population Using Copy Number Variation
Erica Gorla, Università degli Studi di Milano - Dept. DiMeVet; Maria C. Cozzi, Università degli Studi Milano - Dept. DiMeVet; Román Ponce Sergio Ivan, CENID FyMA INIFAP; Felipe de Jesús Ruiz, CENID FyMA INIFAP; Vicente Murillo Vega Eliezer, INIFAP; Silvia Cerolini, Università degli Studi di Milano - DIMEVET; Alessandro Bagnato, Università degli Studi Milano - Dept. DiMeVet; Maria G. Strillacci, Università degli Studi Milano - Dept. DiMeVet

P1130
The Genetic Foundation of a Newly Identified Sex-Linked Mutant of Chicken Tail
Qiong Wang, Department of Animal Genetics and Breeding, National Engineering Laboratory for Animal Breeding, College of Animal Science and Technology, China Agricultural University; Jinsong Pi, Institute of Animal Husbandry and Veterinary Science, Hubei Academy of Agricultural Sciences/Hubei Key Laboratory of Animal Embryonic Engineering and Molecular Breeding; Ailuan Pan, Institute of Animal Husbandry and Veterinary Science, Hubei Academy of Agricultural Sciences/Hubei Key Laboratory of Animal Embryonic Engineering and Molecular Breeding; Jie Shen, Institute of Animal Husbandry and Veterinary Science, Hubei Academy of Agricultural Sciences/Hubei Key Laboratory of Animal Embryonic Engineering and Molecular Breeding; Lujiang Qu, Department of Animal Genetics and Breeding, National Engineering Laboratory for Animal Breeding, College of Animal Science and Technology, China Agricultural University

P1131
Down-Regulation in the Chicken Thymus Transcriptome in Response to Heat Stress and Lipopolysaccharide
Melissa S. Monson, Iowa State University; Angelica G. Van Goor, Iowa State University; Christopher M. Ashwell, North Carolina State University; Michael E. Persia, Virginia Polytechnic Institute and State University; Max F. Rothschild, Iowa State University; Carl J. Schmidt, University of Delaware; Susan J. Lamont, Iowa State University

P1132
Transcriptome Analysis of Host Response to Heat Stress in Two Genetically Distinct Chicken Inbred Lines
Ying Wang, University of California, Davis; Perot Saelao, University of California, Davis; Colin Kern, University of California, Davis; Kelly Chanthavixay, University of California, Davis; Sihua Jin, University of California, Davis; Rodrigo A. Gallardo, University of California, Davis, School of Veterinary Medicine, Population Health and Reproduction; Terra R. Kelly, University of California, Davis, School of Veterinary Medicine, Population Health and Reproduction; Susan J. Lamont, Iowa State University, Department of Animal Science; Huaijun Zhou, University of California, Davis

P1133
Chicken Hepatic Response to Chronic Heat Stress Using Integrated Transcriptome and Metabolome Analysis
Sara F. Jastrebski, University of Delaware; Susan J. Lamont, Iowa State University, Department of Animal Science; Carl J. Schmidt, University of Delaware

P1134
Transcriptional Response to Thermal Stress in Turkey Muscle
Natalie E. Barnes, University of Minnesota; Gale M. Strasburg, Michigan State University; Sandra G. Velleman, The Ohio State University; Kent M. Reed, University of Minnesota

P1135
Duplication of Chicken defensin7 Gene Generated By Gene Conversion and Homologous Recombination
Mi Ok Lee, Texas A&M University; James Womack, Texas A&M University

P1136
Transcriptome Analysis Reveals Distinct Immune Responses to Newcastle Disease Virus in Spleen Between Resistant and Susceptible Chicken Lines
Jibin Zhang, Iowa State University, Department of Animal Science; Michael G. Kaiser, Iowa State University, Department of Animal Science; Melissa S. Herrmann, Iowa State University, Department of Animal Science; Rodrigo A. Gallardo, University of California, Davis, School of Veterinary Medicine, Population Health and Reproduction; David A. Bunn, University of California, Davis, Department of Animal Science; Terra R. Kelly, University of California, Davis, School of Veterinary Medicine, Population Health and Reproduction; Jack C.M. Dekkers, Iowa State University, Department of Animal Science; Huaijun Zhou, University of California, Davis; Susan J. Lamont, Iowa State University, Department of Animal Science

P1137
Management of Bacterial Chondronecrosis with Osteomyelitis: Impact of Non- Pathogenic and Pathogenic Bacterial Isolates on Lameness in Birds
Nnamdi Simon Ekesi, University of Arkansas, Cell and Molecular Biology program; Adnan Alrubaye, University of Arkansas/Fayetteville; Abdulkarim Shwani, University of Arkansas, Cell and Molecular Biology program; Nima Khodambashi, Ferdowsi University of Mashhad; Robert F Wideman, University of Arkansas; Douglas D. Rhoads, University of Arkansas, Cell and Molecular Biology Program

P1138
Hepatic Gene Expression Analysis of Wooden Breast Disease in Chickens
Emma Fare, Department of Biological Sciences, University of Delaware; Marie Mutryn, Department of Animal Science, University of Delaware; Zhu Zhuo, Department of Animal and Food Sciences, University of Delaware; William Lee, Maple Leaf Farms; Behnam Abasht, University of Delaware

P1139
Discovery and Characterisation of Novel Avian Leukosis Virus Subgroup-E (ALVE) Insertions in Commercial Chickens Using Next Generation Sequencing Data
Andrew S Mason, The Roslin Institute; Ashlee R Lund, Hy-line; Samantha J Lycett, The Roslin Institute; Paul M. Hocking, The Roslin Institute, The University of Edinburgh; Janet E. Fulton, Hy-Line International; David W. Burt, Roslin Institute Univ of Edinburgh

P1140
Integration of Genomes and Transcriptomes Traces Evolutionary Trajectories Underlying Remould of Ingenious Red Jungle Fowls into Today's Diversified Dynamos
Yali Hou, Beijing Institute of Genomics, Chinese Academy of Sciences; Furong Qi, Beijing Institute of Genomics, Chinese Academy of Sciences; Xue Bai, Beijing Institute of Genomics, Chinese Academy of Sciences; Tong Ren, Beijing Institute of Genomics, Chinese Academy of Sciences; Xiquan Zhang, South China Agricultural University; Xuemei Lu, Beijing Institute of Genomics, Chinese Academy of Sciences

P1197
Allele-Specific Expression (ASE) of CD4+ T Cells in Response to Marek’s Disease Virus Infection
Hao Bai, University of Maryland; Yanghua He, University of Maryland; Yi Ding, University of Maryland; Jiuzhou Song, University of Maryland

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