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Bioinformatics: Algorithms

P0491
BioBuilds: A Model for Long Term Sustainability of Open Source Bioinformatics
Cheng Lee, Lab7 Systems; John Eargle, Lab7 Systems; Christopher Mueller, Lab7 Systems

P0492
BLINK AD: A Multi-Locus Model for Detecting Additive and Dominance Effects in Genome-Wide Association Studies
Yao Zhou, Northeast Agricultural University; Meng Huang, Washington State University; Zhiwu Zhang, Washington State University

P0493
A Fast and Flexible Method for Improving Genomic Prediction with Biological Information
Jicai Jiang, Department of Animal and Avian Sciences, University of Maryland; Jeffrey R. O'Connell, University of Maryland Medical School; Paul M. VanRaden, Animal Genomics and Improvement Laboratory, ARS-USDA; Li Ma, Department of Animal and Avian Sciences, University of Maryland

P0494
Genetic Study on Clonal F1 and Double Cross Populations
Luyan Zhang, Instititue of Crop Sciences, Chinese Academy of Agricultural Sciences; Jiankang Wang, Instititue of Crop Sciences, Chinese Academy of Agricultural Sciences

P0495
EAGLE: Explicit Alternative Genome Likelihood Evaluator
Tony Kuo, National Institute of Advanced Industrial Science and Technology; Martin C. Frith, National Institute of Advanced Industrial Science and Technology; Jun Sese, Natl Inst Advanced Industrial Science and Technology; Paul Horton, National Institute of Advanced Industrial Science and Technology

P0496
Impact of the Genetic Diversity of the Reference Population on the Accuracy of Imputation of Rare Variants
Adrien M. Butty, Centre for the Genetic Improvement of Livestock, Department of Animal Biosciences, University of Guelph; Filippo Miglior, Centre for the Genetic Improvement of Livestock, Department of Animal Biosciences, University of Guelph; Paul Stothard, Livestock Gentec, Department of Agricultural, Food & Nutritional Sciences, University of Alberta; Flavio Schenkel, Centre for the Genetic Improvement of Livestock, Department of Animal Biosciences, University of Guelph; Birgit Gredler, Qualitas AG; Mehdi Sargolzaei, Unknown; Christine F. Baes, Centre for the Genetic Improvement of Livestock, Department of Animal Biosciences, University of Guelph

P0497
Chromosome-Specific Genomic Relationships Using Haplotypes for Genomic Prediction and Variance Component Estimation
Dzianis Prakapenka, Department of Animal Science, University of Minnesota; Li Ma, Department of Animal and Avian Sciences, University of Maryland; Yang Da, Department of Animal Science, University of Minnesota

P0498
JBLUP: The Joint Best Linear Unbiased Prediction Using BLUP and GBLUP Solutions
Cheng Tan, Department of Animal Science, University of Minnesota; Dzianis Prakapenka, Department of Animal Science, University of Minnesota; Li Ma, Department of Animal and Avian Sciences, University of Maryland; Zhenfang Wu, College of Animal Science, South China Agricultural University; Xiaoxiang Hu, State Key Laboratory for Agrobiotechnology, China Agricultural University; Yang Da, Department of Animal Science, University of Minnesota

P0499
A Novel Strategy for Discovering the Best Genotype from a Large Number of Candidates with Genomic Prediction
Ryokei Tanaka, The University of Tokyo; Hiroyoshi Iwata, The University of Tokyo

P0500
Multi-Task Learning for Genomic Prediction Robust to Missing Data in Multi-Environmental Trials
Tomoaki Hori, The University of Tokyo; Hideki Takanashi, The University of Tokyo; Masaru Fujimoto, The University of Tokyo; Hiromi Kajiya-Kanegae, JST, CREST; Kiyoshi Yamazaki, The University of Tokyo; Tsuneo Hakoyama, RIKEN; Mai Minamikawa, The University of Tokyo; Atsushi Nagano, Ryukoku University; Masaaki Kobayashi, Meiji University; Takashi Sazuka, Nagoya University; Kentaro Yano, Meiji University; Tsuyoshi Tokunaga, Earth Note Co. Ltd.; Toru Fujiwara, JST, CREST; Nobuhiro Tsutsumi, The University of Tokyo; Hiroyoshi Iwata, The University of Tokyo

P0501
Evaluating Feature Selection and Classification Methods for Unbalanced Multiclass Data with Small Sample Size
Erliang Zeng, University of South Dakota

P0502
Biclustering in Big Biological Data Analysis
Juan Xie, South Dakota State University; Qin Ma, South Dakota State University

P0503
ATomiCG: A Novel Segmentation Algorithm for Studying DNA Composition
Massimo Cellesi, University of Sassari; Nicolo P. P. Macciotta, University of Sassari; Corrado Dimauro, University of Sassari, Italy; Giustino Gaspa, University of Sassari; Silvia Sorbolini, University of Sassari

P0504
Rudimentary Genomic Reference for the Grizzly Bear Derived Using Short Read Data from Several Animals
Kalpani DeSilva, University of Louisville; Theodore S. Kalbfleisch, University of Louisville; Charles T. Robbins, Washington State University; Heiko T. Jansen, Washington State University; Michelle McGuire, Washington State University; William W. Laegreid, University of Wyoming; Michael P. Heaton, USDA, ARS, U.S. Meat Animal Research Center (USMARC); Brenda M. Murdoch, University of Idaho

P0505
Pedigree-Based Genotype Imputation at Scale
Nathan D. VanderKraats, Monsanto Company

P0506
Multiple Alignment of Optical Mapping Facilitates Typing in Complex Regions
Claire Yik-Lok Chung, The Chinese University of Hong Kong; Alden King-Yung Leung, The Chinese University of Hong Kong; Ting-Fung Chan, The Chinese University of Hong Kong

P0507
Sequence Analysis & Assembly with the LOGAN Framework
Anthony Bolger, RWTH Aachen; Bjoern Usadel, Forschungzentrum Juelich & RWTH Aachen

P0508
Phased Diploid Genome Assembly with Single-Molecule Real-Time Sequencing
Gregory T Concepcion, Pacific Biosciences

P0509
MPageRank: A Novel Method to Effectively Mine Functional Modules in Heterogeneous Biological Networks
Jun Li, University of Texas MD Anderson Cancer Center; Patrick Xuechun Zhao, The Samuel Roberts Noble Foundation

P0510
De Novo Gene Set Assembly of the Transcriptome of the Diploid, Oilseed-Crop Species Perilla Citriodora
Sung-Hwan Jo, SEEDERS Inc.; Ji-Eun Kim, SEEDERS Inc.; Jeong-Hee Lee, SEEDERS Inc.; Junkyoung Choe, SEEDERS Inc.; Sangmi Kim, SEEDERS Inc.; Myoung Hee Lee, National Insistute of Crop Science, RDA; Tae-Ho Kim, National Academy of Agricutural Science(NAAS), RDA

P0511
Investigating Frequented Regions (FRs) in a Yeast Pan-Genome
Alan M. Cleary, Montana State University; Thiruvarangan Ramaraj, National Center for Genome Resources (NCGR); Joann Mudge, National Center for Genome Resources (NCGR); Brendan Mumey, Montana State University

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