4173
Bioinformatics

Date: Tuesday, January 17, 2017
Time: 10:30 AM-12:40 PM
Room: Golden West
Organizers:
Tatiana Tatusova and Aleksey Zimin
10:30 AM
W075
Combining Nanopore Sequencing and Conformation Capture for the Reconstruction of Complete Chromosomes
Sergey Koren, National Human Genome Research Institute, National Institutes of Health; Brian P Walenz, National Human Genome Research Institute, National Institutes of Health; Jay Ghurye, University of Maryland; Konstantin Berlin, Invincea, Inc.; Mihai Pop, University of Maryland; Adam M Phillippy, National Human Genome Research Institute, National Institutes of Health

10:50 AM
W076
Using Linked-Reads to Enable Efficient de novo Diploid Assembly
Deanna M. Church, 10x Genomics Inc.; Claudia Catalanotti, 10x Genomics Inc.; Jill Herschleb, 10x Genomics Inc.; Vijay Kumar, 10x Genomics Inc.; Preyas Shah, 10x Genomics Inc.; Neil Weisenfeld, 10x Genomics Inc.; Michael Schnall-Levin, 10x Genomics Inc.; David Jaffe, 10x Genomics Inc.

PDF file
11:10 AM
W077
Visualization and Analysis Tools for Comparing Genomes and Assemblies
Maria Nattestad, Cold Spring Harbor Laboratory; Jason Chin, Pacific Biosciences; Michael Schatz, Cold Spring Harbor Laboratory

11:30 AM
W078
Function Prediction: Using Ahrd to Annotate Human Readable Descriptions and Gene Ontology Terms.
Heiko Schoof, INRES Crop Bioinformatics, University of Bonn

11:50 AM
W079
Analysis of Nucleotide Diversity in Oryza sativa Across Functionally Important Genomic Regions
Tatiana Tatarinova, University of Southern California; Evgenii Chekalin, Laboratory for Functional Genomics, VIGG; Yuri V. Nikolsky, George Mason University; Sergey Bruskin, Laboratory for Functional Genomics, VIGG; Dmytro Chebotarov, International Rice Research Institute; Kenneth L. McNally, International Rice Research Institute; Nickolai Alexandrov, International Rice Research Institute

12:10 PM
W080
Structural and Functional Annotation of Model and Non-Model Organisms with GenSAS v5.0, a Web-Based Annotation Platform
Jodi L. Humann, Washington State University; Stephen P. Ficklin, Washington State University; Taein Lee, Washington State University; Chun-Huai Cheng, Washington State University; Heidi Hough, Washington State University; Sook Jung, Washington State University; Jill L. Wegrzyn, Department of Ecology and Evolutionary Biology - University of Connecticut; David B. Neale, Dept. Plant Sciences University of California Davis; Dorrie Main, Washington State University

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