4188
Coffee Genomics

Date: Sunday, January 15, 2017
Time: 4:00 PM-6:10 PM
Room: Pacific Salon 3
Organizers:
Marcela Yepes and Philippe Lashermes
4:00 PM
W171
Using PACBio Long-Reads to Generate High Quality References for the Allotetraploid Coffea arabica and Its Diploid Maternal Ancestor C. eugenioides: characterization of Genomic Regions Containing QTLs for Yield, Plant Height, and Bean Size
Carlos Ernesto Maldonado, Centro Nacional de Investigaciones de Café, CENICAFE; Marcela Yepes, Cornell University/ School of Integrative Plant Sciences/ Plant Pathology and Plant Microbe Biology Section; Aleksey Zimin, University of Maryland; Keithanne Mockaitis, Indiana University; Alvaro Gaitán, Centro Nacional de Investigaciones de Café, CENICAFE; Pilar Moncada, Centro Nacional de Investigaciones de Café, CENICAFE; Carrie Ganote, Indiana University; Beatriz Elena Padilla, Arizona Genomics Institute, University of Arizona; Narmer Fernando Galeano, Universidad Católica de Manizales; Carmenza E. Góngora, Centro Nacional de Investigaciones de Café, CENICAFE; Claudia Flórez, Centro Nacional de Investigaciones de Café, CENICAFE; Ricardo Acuña, Centro Nacional de Investigaciones de Café, CENICAFE; Andrés Mauricio Villegas, Centro Nacional de Investigaciones de Café, CENICAFE; Huver Posada, Federación Nacional de Cafeteros de Colombia (FNC)/ Centro Nacional de Investigaciones de Café (CENICAFE); Rod A. Wing, Arizona Genomics Institute, University of Arizona; James A Yorke, University of Maryland; Herb Aldwinckle, Cornell University/ School of Integrative Plant Sciences/ Plant Pathology and Plant Microbe Biology Section

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4:40 PM
W172
Insights from the Genome of the Major Coffee Insect Pest Worldwide: The Coffee Berry Borer
Lucio Navarro, Centro Nacional de Investigaciones de Cafe, CENICAFE; Flor Edith Acevedo, Centro Nacional de Investigaciones de Cafe, CENICAFE; Jonathan Nuñez, Centro Nacional de Investigaciones de Cafe, CENICAFE; Erick Hernandez, Sao Paulo State University; Rita Daniela Fernandez-Medina, Escola Nacional de Saúde Pública, Fundação Oswaldo Cruz; Claudia Carareto, UNESP - Universidade Estatual Paulista; Pablo Benavides, Centro Nacional de Investigaciones de Cafe, CENICAFE; Stuart Jeffrey, Purdue University

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4:56 PM
W173
Towards GWAS and Genomic Prediction in Coffee: Development and Validation of a 26K SNP Chip for Coffea canephora
Alan C. Andrade, Embrapa Café/INOVACAFÉ - UFLA; Orzenil B. da Silva Junior, Embrapa Recursos Genéticos e Biotecnologia; Fernanda de A. Carneiro, Graduate Program on Plant Biotechnology - UFLA; Pierre Marraccini, CIRAD UMR AGAP; Dario Grattapaglia, Embrapa Recursos Genéticos e Biotecnologia

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5:12 PM
W174
Comparison of Statistical Methods and Reliability of Genomic Prediction in Coffea canephora Populations
Luis Felipe V. Ferrão, University of São Paulo (ESALQ/USP); Romario G. Ferrão, Instituto Capixaba de Pesquisa,Assistência Técnica e Extensão Rural; Maria A. G. Ferrão, INCAPER/EMBRAPA CAFÉ; Aymbire Fonseca, Instituto Capixaba de Pesquisa e Assistência Técnica e Extensão Rural / Embrapa Café; Matthew Stephens, University of Chicago; Antonio Augusto Franco Garcia, University of São Paulo (ESALQ/USP)

5:28 PM
W175
Coffee Forest Biodiversity and Implications for Multi-Site in situ Conservation Approach in the Afromontane Rainforests of Ethiopia
Kassahun Tesfaye, Addis Ababa University; Feyera Senbeta, College of Development Studies Addis Ababa University

5:44 PM
W176
Update on the Sequencing of the Coffea arabica Variety, Geisha
Allen Van Deynze, University of California; Amanda M. Hulse-Kemp, University of California; Michael C. Schatz, Johns Hopkins University; Jason Chin, Pacific Biosciences; Jay Ruskey, Good Land Organics; Dario Cantu, University of California; Juan F. Medrano, University of California

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