4245
IWGSC - Standards and Protocols

The workshop will focus on the annotation and curation of the hexaploid bread wheat reference genome sequence.
Date: Tuesday, January 17, 2017
Time: 1:30 PM-6:10 PM
Room: Pacific Salon 3
Organizers:
Jane Rogers and Frederic Choulet
1:30 PM
Introductory Remarks


1:35 PM
W574
Wheat Genome Structural Annotation using a Modular and Evidence-Combined Annotation Pipeline.
Xi Wang, Bayer CropScience

1:55 PM
W575
Challenges of Gene and Repeat Annotation of the Wheat Genome Sequence
Frédéric Choulet, INRA GDEC

PDF file
2:15 PM
W576
Reference gene prediction in the hexaploid bread wheat genome
Manuel Spannagl, PGSB - Plant Genome and Systems Biology, Helmholtz Center Munich, German Research Center for Environmental Health (GmbH); Sven O. Twardziok, PGSB - Plant Genome and Systems Biology, Helmholtz Center Munich, German Research Center for Environmental Health (GmbH); Thomas Lux, Plant Genome Systems Biology; Helmholtz Center Munich; Klaus F.X. Mayer, PGSB - Plant Genome and Systems Biology, Helmholtz Center Munich, German Research Center for Environmental Health (GmbH)

PDF file
2:35 PM
W577
Integrating Wheat RNA-Seq Data into the expVIP Gene Expression Browser with Multiple Reference Genomes
Jemima Brinton, John Innes Centre

2:55 PM
W578
The Wheat Genome Visualised in Apollo: Variation in the Clarity of Defining and Naming Gene Models.
Rudi Appels, Murdoch University

PDF file
3:15 PM
W579
High-Resolution Study of Wheat Transcriptomes in response to Drought and Salinity and Ontologies
Matthew Geniza, Oregon State University; Pankaj Jaiswal, Department of Botany & Plant Pathology, Oregon State University

PDF file
3:35 PM
W580
Tools for Community Genome Annotation: ZMap and Otter
Jane Loveland, Wellcome Trust Sanger Institute; Adam Frankish, Wellcome Trust Sanger Institute

3:55 PM
W581
Genome Curation and Maintenance at NCBI
Brian Smith-White, National Center for Biotechnology Information (NCBI/NLM/NIH); Paul Kitts, NIH/NLM/NCBI; Kim D. Pruitt, National Center for Biotechnology Information (NCBI/NLM/NIH); Terence D. Murphy, National Center for Biotechnology Information (NCBI/NLM/NIH); Francoise Thibaud-Nissen, National Center for Biotechnology Information (NCBI/NLM/NIH); Valerie A. Schneider, National Center for Biotechnology Information (NCBI/NLM/NIH)

4:15 PM
W582
The IWGSC Reference Genome Browser, Data Mining and Beyond
Michael Alaux, INRA - URGI; Thomas Letellier, URGI, INRA, Université Paris-Saclay; Françoise Alfama, INRA - URGI; Jane Rogers, International Wheat Genome Sequencing Consortium; Frédéric Choulet, INRA GDEC; Claire Guerche, INRA - URGI; Mikael Loaec, INRA - URGI; Raphael Flores, INRA - URGI; Célia Michotey, URGI, INRA, Université Paris-Saclay; Anne-Francoise Adam-Blondon, INRA - URGI; Etienne Paux, INRA Auvergne-Rhône-Alpes; Kellye Eversole, Eversole Associates; Hadi Quesneville, INRA - URGI

4:35 PM
W583
H3K27me3, a Key Player in Wheat Gene and Genome Organization and Regulation?
Etienne Paux, INRA GDEC

PDF file
4:55 PM
Discussion


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