4249
Connecting Crop Phenotype Data

The final frontier for the application of plant genomics to plant improvement may be the acquisition and analysis of phenotype data for the multigenic, environment-sensitive traits important for crops grown in the field. High-quality phenotype data remains expensive to produce, but its value is being leveraged by interpreting it in terms of associated genome-wide molecular marker alleles. This workshop will address the current status and plans for phenotype data input, organization, standards, querying, delivery, integration with genotype data, and analysis.
Date: Saturday, January 14, 2017
Time: 10:30 AM-12:40 PM
Room: Golden Ballroom
Organizers:
Clay Birkett and Jean-Luc Jannink
10:30 AM
KnetMiner - Interrogate Plant and Animal Knowledge Networks
Keywan Hassani-Pak, Rothamsted Research

10:50 AM
BrAPI, a Standard Interface for Plant Databases
Jan Erik Backlund, Integrated Breeding Program

11:10 AM
Visualizations of Phenotypic and QTL Data
David Marshall, The James Hutton Institute

11:30 AM
CyVerse Data Commons
Ramona Walls, CyVerse; Matt Hanlon, Texas Advanced Computing Center; Maria Esteva, University of Texas; Kapeel Chougule, Cold Spring Harbor Laboratory; Jeremy de Barry, IPlant Collaborative; Upendra Devisetty, CyVerse; Nirav Merchant, CyVerse; Marjo Poindexter, University of Texas; Dennis Roberts, CyVerse; Sriram Srinivasan, CyVerse

11:50 AM
Transplant Integrated Search using Apache Solr
Paul J. Kersey, EMBL - The European Bioinformatics Institute; Dan Bolser, EMBL - The European Bioinformatics Institute

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