This workshop focuses on the discovery of non-coding RNAs (ncRNAs) (long and short) within plants and animals. This is a highly relevant area of genomics since the actual number of RNA genes in different organisms is unknown alongside they specific function. Also since there is a growing number of functional and trait related single nucleotide polymorphisms (SNPs) lying outside the coding sequence, these genes are of medical and agricultural relevance. In the workshop topics range from annotation and in silico discovery in genome, a transcriptomic data analysis to identify new genes using a variety of methodologies, alongside strategies to address functional and structural aspects of ncRNA identification including long non-coding RNAs.
Date: Sunday, January 15, 2017
Time: 1:30 PM-3:40 PM
Room: Royal Palm Salon 3-4
Organizers:
Jan Gorodkin
and
Keith Adams
1:30 PM
Non-Coding RNAs: Striking Features in Use of Alternative Polyadenylation Sites
Xiang Zhou, Washington State University;
Yangzi Zhang, Washington State University;
Julianna N. Brutman, Washington State University;
Jennifer J. Michal, Washington State University;
Honglin Jiang, VirginiaTech;
Ying Wang, University of California, Davis;
Pablo J. Ross, Animal Science, University of California Davis;
Mary E. Delany, Animal Science, University of California;
Huaijun Zhou, University of California, Davis;
Hans H. Cheng, USDA, ARS, ADOL;
Jon F. Davis, Washington State University;
Zhihua Jiang, Washington State University
1:50 PM
Wax-on, Wax-Off: ncRNA Mediate Control of Glaucousness in Wheat
J. Allan Feurtado, National Research Council Canada;
Daiqing Huang, National Research Council Canada;
Mark Smith, National Research Council Canada;
Leah K. Flatman, National Research Council Canada;
Chu Shin Koh, National Research Council Canada;
Adrian J Cutler, National Research Council Canada
2:10 PM
A Study of Pig Chromosome X lncRNA Expression
Sarah Djebali, INRA;
Oana Palasca, Center for non-coding RNA in Technology and Health;
Christian Anthon, Center for non-coding RNA in Technology and Health, Department of Veterinary Clinical and Animal Sciences, University of Copenhagen;
Thomas Derrien, IGDR- CNRS/University of Rennes I;
Ole Madsen, Wageningen University;
Mark Thomas, Wellcome Trust Sanger Institute;
Evan Floden, Center for Genomic Regulation;
Jakob H. Havgaard, Center for non-coding RNA in Technology and Health, Department of Veterinary Clinical and Animal Sciences, University of Copenhagen;
Stefan E. Seemann, Center for non-coding RNA in Technology and Health, Department of Veterinary Clinical and Animal Sciences, University of Copenhagen;
Jose M. Gonzales, Wellcome Trust Sanger Institute;
Alexander Junge, Center for non-coding RNA in Technology and Health, Department of Veterinary Clinical and Animal Sciences, University of Copenhagen;
Alicja Pacholewska, University of Copenhagen;
Konstantinos Billis, European Molecular Biology Laboratory - EBI;
Ferhat Alkan, Center for non-coding RNA in Technology and Health, Department of Veterinary Clinical and Animal Sciences, University of Copenhagen;
Lel Eory, Roslin Institute University of Edinburgh;
Andreia Amaral, BioISI - Biosystems, Integrative Sciences Institute;
Pablo Prieto Barja, Center for Genomic Regulation;
Peter F. Stadler, Bioinformatics Group, Department of Computer Science University of Leipzig;
Cedric Notredame, Center for Genomic Regulation;
Martien A.M. Groenen, Wageningen University;
Jennifer Harrow, Wellcome Trust Sanger Institute;
Jan Gorodkin, Center for non-coding RNA in Technology and Health, Department of Veterinary Clinical and Animal Sciences, University of Copenhagen
