4288
SGN and RTB Databases: Genomes, Pathways and Breeder Tools.

The Mueller lab develops databases and webtools for analysis and visualization of genomic and phenotypic data for the Solanaceae (SGN, Solgenomics.net), and root, tuber and banana (RTB) crops (Cassavabase.org, Yambase.org, Sweetpotatobase.org, Musabase.org). In this workshop, we will focus on the new tomato genome annotation efforts and bioinformatics tools, Solanaceae pathway databases and breeder data management tools. Biologists, breeders, and bioinformaticians interested in utilizing the data and tools on our databases, and exchanging experiences, ideas and co-developing tools will benefit from attending this workshop.
Date: Tuesday, January 17, 2017
Time: 10:30 AM-12:40 PM
Room: Towne - Meeting House
Organizers:
Isaak Y. Tecle and Lukas Mueller
10:30 AM
W832
Breeder Tools on SGN and RTB Databases
Lukas Mueller, Boyce Thompson Institute

10:50 AM
W833
Sol Genomics Network Bioinformatics Web Tools
Surya Saha, Boyce Thompson Institute

11:10 AM
W835
Improved Tomato Genome Reference using Full-Length BACs, BioNano Genome Maps and SGN Community Resources
Mirella Flores-Gonzalez, Boyce Thompson Institute; Surya Saha, Boyce Thompson Institute; Prashant S Hosmani, Boyce Thompson Institute; Henri van de Geest, Plant Research International, Wageningen University & Research; Gabino F. Sanchez Perez, Plant Research International, Wageningen University & Research; Lukas Mueller, Boyce Thompson Institute

11:30 AM
W834
ITAG3.0 Annotation for the New Tomato Reference Genome SL3.0
Prashant S Hosmani, Boyce Thompson Institute; Surya Saha, Boyce Thompson Institute; Mirella Flores-Gonzalez, Boyce Thompson Institute; Stephane Rombauts, VIB Department of Plant Systems Biology, Ghent University; Lukas Mueller, Boyce Thompson Institute

11:50 AM
W836
Tomato Genome Annotation and Curation at NCBI
Anjana Raina Vatsan, National Center for Biotechnology Information (NCBI/NLM/NIH); Francoise Thibaud-Nissen, National Center for Biotechnology Information (NCBI/NLM/NIH); Terence D. Murphy, National Center for Biotechnology Information (NCBI/NLM/NIH); Kim D. Pruitt, National Center for Biotechnology Information (NCBI/NLM/NIH)

PDF file
12:10 PM
W837
Pathway/Genome Databases of the Solanaceae: Capturing Metabolic Data in Taxon - Specific Databases
Hartmut Foerster, Boyce Thompson Institute; Lukas Mueller, Boyce Thompson Institute

PDF file
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