4300
Swine

The swine workshop will highlight updates on the genome assembly, applications of transcriptional and genome-wide association analyses in identification of markers linked to important production traits in swine. Speakers will present their results using new genomic technologies and bioinformatic pipelines.
Date: Saturday, January 14, 2017
Time: 1:30 PM-6:10 PM
Room: Royal Palm Salon 1-2
Organizer:
Kiho Lee
1:30 PM
Introductory Remarks


1:35 PM
Whole Genome Sequence Analysis Reveals Antimicrobial Resistance Genes, Plasmids and Potentially Unique Sequence Types of Enterotoxigenic Escherichia coli Isolates Causing Colibacillosis in Neonatal and Weaning Piglets of South Africa
Mary Ranketse, Agricultural Research Council-Biotechnology Platform; Farai C. Muchadeyi, Agricultural Research Council; Evelyn Madoroba, Agricultural Research Council-Bacteriology; Edgar F. Dzomba, University of KwaZulu-Natal

2:00 PM
A Whole-Genome Association Scan Detects Several Genetic Regions Influencing Semen Quality Traits in the Boar’s Sperm.
Alex Clop, Center for Research in Agricultural Genomics (CRAG) CSIC-IRTA-UAB-UB; Marta Gòdia, Center for Research in Agricultural Genomics, Universitat Autònoma de Barcelona; Anna Castelló, Centre for Research in Agricultural Genomics (CRAG); Rayner Gonzalez, Center for Research in Agricultural Genomics - University Autonomus of Barcelona; Marc Yeste, University of Girona; Joan E. Rodríguez-Gil, Unit of Animal Reproduction, Department of Animal Medicine and Surgery, Universitat Autònoma de Barcelona; Armand Sánchez, Centre de Recerca en Agrigenòmica (CRAG)

2:25 PM
Use of CRISPR/Cas9 to Induce Targeted Mutagenesis during Porcine Embryogenesis
Kiho Lee, Virginia Tech; Junghyun Ryu, Virginia Tech; Kyungjun Uh, Virginia Tech; Caitlin Ray, Virginia Tech

2:40 PM
Usmarc Update on Swine Reproduction Research
Dan Nonneman, USDA, ARS, USMARC; Clay A Lents, USDA, ARS, USMARC; Brittney N Keel, USDA, ARS, USMARC; Gary A. Rohrer, USDA, ARS, USMARC

2:55 PM
A Genomic Investigation of Porcine Periweaning Failure to Thrive Syndrome (PFTS)
Francesca Bertolini, Iowa State University; Tianfu Yang, University of Alberta; Yanyun Huang, Department of Large Animal Clinical Sciences, Western College of Veterinary Medicine, University of Saskatchewan; John Harding, Department of Large Animal Clinical Sciences, Western College of Veterinary Medicine, University of Saskatchewan; Max F. Rothschild, Iowa State University; Graham S Plastow, Livestock Gentec, Department of Agricultural, Food & Nutritional Sciences, University of Alberta

3:10 PM
Jorgenson Genome Travel Award Winner


3:20 PM
Administrator and Coordinator Reports


3:35 PM
Discussion of Community Needs and Resources


3:50 PM
Break


4:05 PM
Reecy
James M. Reecy, Department of Animal Science, Iowa State University

4:20 PM
Tuggle
Christopher K. Tuggle, Iowa State University, Department of Animal Science

4:35 PM
Development of Nanostring Codesets to Evaluate Fetal and Maternal Gene Expression in Response to Porcine Reproductive Reproductive and Respiratory Syndrome Virus (PRRSV) Infection
Joan K. Lunney, APDL, BARC, ARS, USDA; Linjun Hong, ARS, USDA,; Andrea Ladinig, University of Veterinary Medicine Vienna; John Harding, Department of Large Animal Clinical Sciences, Western College of Veterinary Medicine, University of Saskatchewan

4:50 PM
Integration of Genomic Resources to Uncover Pleiotropic Regions Associated with Age at Puberty and Reproductive Longevity in Sows
Daniel C. Ciobanu, University of Nebraska - Lincoln; Hiruni R Wijesena, University of Nebraska - Lincoln; Clay A Lents, USDA, ARS, USMARC; Melanie Trenhaile, University of Nebraska - Lincoln; Jean-Jack Riethoven, University of Nebraska - Lincoln; Jennifer F Thorson, USDA, ARS, USMARC; Brittney N Keel, USDA, ARS, USMARC; Phillip S. Miller, University of Nebraska - Lincoln; Matt L. Spangler, University of Nebraska - Lincoln; Stephen D. Kachman, University of Nebraska - Lincoln

5:05 PM
NCSU Update
Christian Maltecca, NCSU

5:20 PM
Evaluation of Four US Pig Breeds Using the Affymetrix Axiom Pig HD Array
Scott A. Funkhouser, Genetics Program, Michigan State University; Juan P. Steibel, Department of Animal Science, Michigan State University; Doug Newcom, National Swine Registry; Catherine W. Ernst, Department of Animal Science, Michigan State University

5:35 PM
Whole Transcriptome Termini Site Sequencing Reveals Gender Differences in Genome-Wide Usage of Alternative Polyadenylation Sites
Xiang Zhou, Washington State University; Jennifer J. Michal, Washington State University; Yangzi Zhang, Washington State University; Richard M. Harland, University of California Berkeley; Zhihua Jiang, Washington State University

5:50 PM
Election of Officers and Other Business


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