4309
Tripal Database Network and Initiatives

Tripal is a toolkit for construction of online genome research community databases (http://tripal.info), and is currently in use by a variety of plant and animal genome databases. It uses the GMOD Chado database schema, and Drupal, a popular content management system (CMS). It is currently suited for display of genomic, genetic and breeding data, although it supports integration with all of Chado. It is designed to reduce costs associated with development of online biological databases to allow a single group with no computer programming expertise to publish biological data online in a browseable format. It also supports larger communities with programming expertise through an Application Programming Interface (API) and editable data templates to allow for site-specific customizations. These customizations can be shared with other Tripal users, particularly in the form of extension modules, which can be added to any site. This workshop provides an introduction to Tripal, usage examples, information about planned developments, and talks from community database developers.
Date: Sunday, January 15, 2017
Time: 4:00 PM-6:10 PM
Room: California
Organizers:
Stephen P. Ficklin and Lacey-Anne Sanderson
4:00 PM
W956
Tripal Introduction and Core Development Efforts
Stephen P. Ficklin, Washington State University; Chun-Huai Cheng, Washington State University; Nick Watts, Clemson University; Ming Chen, University of Tennessee; Connor Wytko, Washington State University; Brian Soto, Washington State University; Lacey-Anne Sanderson, University of Saskatchewan; Sook Jung, Washington State University; Kuang-Ching Wang, Clemson University; Margaret Staton, University of Tennessee, Knoxville; Dorrie Main, Washington State University; Alex Feltus, Genetics & Biochemistry, Clemson University; Jill L. Wegrzyn, Department of Ecology and Evolutionary Biology - University of Connecticut

4:25 PM
W957
Development of TripalMap
Katheryn Buble, Washington State University; Sook Jung, Washington State University; Jodi L. Humann, Washington State University; Chun-Huai Cheng, Washington State University; Taein Lee, Washington State University; Stephen P. Ficklin, Washington State University; Jing Yu, Washington State University; Dorrie Main, Washington State University

4:40 PM
W958
Extending Tripal for Community-Based Management and Distribution of Genotypic and Phenotypic Data
Lacey-Anne Sanderson, University of Saskatchewan; Reynold Tan, University of Saskatchewan; Carolyn T. Caron, University of Saskatchewan; Kirstin Bett, University of Saskatchewan

4:55 PM
W959
CartograTree Workflows with Tripal API for Association Mapping in Forest Trees
Nic Herndon, University of Connecticut; Qiaoshan Lin, University of Connecticut; Michael Wynne, University of Connecticut; Emily Grau, University of Connecticut; Stephen P. Ficklin, Washington State University; Margaret Staton, University of Tennessee, Knoxville; Sook Jung, Washington State University; Dorrie Main, Washington State University; Alex Feltus, Genetics & Biochemistry, Clemson University; Damian Gessler, University of Arizona; Jill L. Wegrzyn, Department of Ecology and Evolutionary Biology - University of Connecticut

5:10 PM
W960
Mainlab Chado Loader, Chado Data Display and Chado Search for Sequence, Map, Marker, QTL, Genotype, Phenotype and Germplasm Data
Sook Jung, Washington State University; Chun-Huai Cheng, Washington State University; Taein Lee, Washington State University; Stephen P. Ficklin, Washington State University; Jing Yu, Washington State University; Jodi L. Humann, Washington State University; Dorrie Main, Washington State University

5:25 PM
W961
Customizing Tripal Sites with Non-Tripal Components at the Legume Information System and Peanutbase
Sudhansu Dash, National Center for Genome Resources (NCGR); Joel Berendzen, National Center for Genome Resources (NCGR); Jacqueline D. Campbell, Iowa State University; Ethalinda Cannon, Iowa State University; Alan Cleary, Montana State University; Maria Hadres, National Center for Genome Resources (NCGR); Sam Hokin, National Center for Genome Resources (NCGR); Wei Huang, Iowa State University; Alex G. Rice, National Center for Genome Resources (NCGR); Pooja E. Umale, National Center for Genome Resources (NCGR); Nathan T. Weeks, USDA-ARS-CICGRU; Andrew Wilkey, USDA-ARS-CICGRU; Andrew Farmer, National Center for Genome Resources (NCGR); Steven B. Cannon, USDA-ARS-CICGRU

5:40 PM
W962
The i5k Workspace@Nal
Christopher Childers, USDA/Agricultural Resarch Service/National Agricultural Library

5:55 PM
W963
New Tripal Extensions: Elasticsearch and Gene Expression Visualization
Margaret Staton, University of Tennessee, Knoxville

See more of: Workshops
<< Previous Workshop | Next Workshop >>