Translational Genomics for Agriculture

Significant advances in recent years have enhanced our understanding of structural and functional aspects of plant genomes. Complete genome sequence has become available for some plant species, while draft genome sequences are being assembled for others. Advances in next-generation sequencing and high-throughput genotyping technologies have made it possible to not only genotype at high-density, but to even re-sequence the mapping populations or germplasm collections. Routine linkage mapping approaches are being transformed to genome-wide association studies (GWAS) for the identification of important marker-trait associations. Marker-assisted selection (MAS) has become an integral part of crop breeding programmes in developed countries/private sector, and in developing countries the use of MAS in breeding programmes has been applied to develop superior varieties/hybrids with better agronomic performance and enhanced resistance/tolerance to biotic/abiotic stresses. New breeding approaches such as marker-assisted recurrent selection (MARS) and genomic selection (GS) are also being used for improving complex traits such as drought tolerance. This workshop is planned to invite genome specialists with extensive experience in genomics-assisted breeding from both public and private sectors to share their experience and propose novel ideas to translate existing genomics knowledge toward the development of new varieties/hybrids. This workshop is expected to catalyze public sector breeding programmes from Asia and Africa to undertake/accelerate translational genomics that will ensure food security in developing countries.
Date: Monday, May 19, 2014
Time: 1:00 PM-3:00 PM
Room: Riverfront 2
Organizer:
Rajeev K Varshney
1:00 PM
Using Next Generation Sequencing to Further Understanding of Plant Pathogen Interactions
Reece Tollenaere, University of Queensland; Salman Alamery, University of Queensland; Nur Shuhadah Mohd Saad, University of Queensland; Alice C Hayward, University of Queensland; Satomi Hayashi, University of Queensland; Philipp Emanuel Bayer, Australian Centre for Plant Functional Genomics; Jessica Dalton-Morgan, University of Queensland; Kenneth Chan, University of Queensland; Michal T. Lorenc, Australian Centre for Plant Functional Genomics; Rosy Raman, NSW Department of Primary Industries; Harsh Raman, NSW Department of Primary Industries; David Edwards, University of Queensland; Jacqueline Batley, University of Queensland

1:20 PM
Association Genetics in European Winter Wheat and Its Use in Wheat Breeding
Martin W. Ganal, TraitGenetics GmbH; Marion S. Röder, IPK; Bernd Rodemann, Julius-Kuehn Institute; Jie Ling, IPK; Sonja Kollers, KWS; Viktor Korzun, KWS; Erhard Ebmeyer, KWS; Odile Argillier, Syngenta; Gunther Stiewe, Syngenta; Thomas Zschaeckel, Syngenta; Maike Hinze, Syngenta; Joerg Plieske, TraitGenetics GmbH

1:40 PM
Application of Whole Genome Re-Sequencing for Accelerated Genetic Improvement of Crops: Examples from Rice
Muluneh Tamiru Oli, Iwate Biotechnology Research Center; Akira Abe, Iwate Biotechnology Research Center; Hiroki Takagi, Iwate Biotechnology Research Center; Satoshi Natsume, Iwate Biotechnology Research Center; Hiroki Yaegashi, Iwate Biotechnology Research Center; Rym Fekih, Iwate Biotechnology Research Center; Ryohei Terauchi, Iwate Biotechnology Research Center

2:00 PM
2:20 PM
Applying Sequencing and High-Throughput SNP Genotyping to Accelerate Progress in Rice Breeding
Michael J. Thomson, International Rice Research Institute; Christine Jade Dilla-Ermita, International Rice Research Institute; Maria Ymber V. Reveche, International Rice Research Institute; Maria S. Dwiyanti, International Rice Research Institute; Venice Margarette Juanillas, International Rice Research Institute; Ramil P. Mauleon, International Rice Research Institute; Bertrand Collard, International Rice Research Institute; Joong Hyoun Chin, International Rice Research Institute; Eero Nissila, International Rice Research Institute

2:40 PM
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