Bioinformatics

Date: Tuesday, January 15, 2013
Time: 10:20 AM-12:30 PM
Room: Golden West
Organizers:
Tatiana Tatusova and Aleksey Zimin
10:20 AM
W092
Protein Function Prediction and Human Readable Descriptions: Integrating Sequence Similarity, Protein Domain Architectures and Lexical Scoring
Heiko Schoof, University of Bonn, INRES Crop Bioinformatics; Asis Hallab, Max Planck Institute for Plant Breeding Research; Kathrin Klee, University of Bonn, INRES Crop Bioinformatics

PDF file
10:40 AM
W093
Genome Assembly Consequences For Gene Annotation
Liliana Florea, Johns Hopkins University School of Medicine; Steven L Salzberg, Johh Hopkins University School of Medicine

11:00 AM
W094
The Vast, Conserved Mammalian lincRNome
Igor Rogozin, National Institutes of Health

PDF file
11:20 AM
W095
Deep Re-Sequencing Of Multiple Accessions Of Rice For The Effective Exploration Of Natural Variations
Hiroaki Sakai, National Institute of Agrobiological Sciences, Japan; Masahiko Kumagai, National Institute of Agrobiological Sciences; Jungsok Kim, National Institute of Agrobiological Sciences, Japan; Jun-ichi Yonemaru, National Institute of Agrobiological Sciences, Japan; Takeshi Itoh, National Institute of Agrobiological Sciences; Masahiro Yano, National Institute of Agrobiological Sciences, Japan; Jianzhong Wu, National Institute of Agrobiological Sciences, Japan

PDF file
11:40 AM
W096
The in silico Chromosome Arm Assigner CarmA: A Component of the “Divide and Conquer” Approach to Tackle Large Plant Genomes
Heidrun Gundlach, MIPS/IBIS, Helmholtz Center Munich; Verena Prade, MIPS/IBIS, Helmholtz Center Munich; Thomas Nussbaumer, MIPS/IBIS, Helmholtz Center Munich; Klaus Mayer, MIPS/IBIS, Helmholtz Center Munich

12:00 PM
W097
MSR-CA -- Efficient De Novo Genome Assembler For Long and Short Read Data
Aleksey Zimin, University of Maryland

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