IWGSC - Standards and Protocols
Update activity on wheat and barley sequencing activity with a focus on data standards and new protocols being developed
Date: Tuesday, January 15, 2013
Time: 1:30 PM-6:00 PM
Room: Golden Ballroom
Organizers:
Catherine Feuillet
and
Rudi Appels
1:30 PM
Assembly Improvement Tricks: Application To The 1Gb Wheat Chromosome 3B (3BSEQ project)
Adriana Alberti, CEA - Genoscope;
Arnaud Couloux, CEA - Genoscope;
Frederic Choulet, INRA GDEC;
Sébastien Theil, INRA GDEC;
Sophie Mangenot, CEA - Genoscope;
Benoit Vacherie, CEA - Genoscope;
Ghislaine Magdelenat, CEA - Genoscope;
Valerie Barbe, CEA - Genoscope;
Catherine Feuillet, INRA GDEC;
Patrick Wincker, CEA - Genoscope
2:05 PM
Sequencing and Assembling a Reference Sequence of the 1 Gb Wheat Chromosome 3B
Frédéric Choulet, INRA GDEC;
Sébastien Theil, INRA GDEC;
Josquin Daron, INRA GDEC;
Natasha Glover, INRA GDEC;
Nicolas Guilhot, INRA GDEC;
Philippe Leroy, INRA GDEC;
Lise Pingault, INRA GDEC;
Etienne Paux, INRA GDEC;
Pierre Sourdille, INRA UMR Genetics, Diversity & Ecophysiology of Cereals;
Adriana Alberti, CEA - Genoscope;
Valerie Barbe, CEA - Genoscope;
Sophie Mangenot, CEA - Genoscope;
Arnaud Couloux, CEA - Genoscope;
Jean-Marc Aury, CEA - Genoscope;
Arnaud Bellec, INRA - CNRGV;
Helene Berges, INRA Toulouse;
Hana Simkova, Institute of Experimental Botany;
Jaroslav Doležel, Institute of Experimental Botany;
Michael Alaux, INRA - URGI;
Hadi Quesneville, INRA - URGI;
Patrick Wincker, CEA - Genoscope;
Catherine Feuillet, INRA GDEC
2:40 PM
Strategies For Sequence Improvement Of BAC-Based Wheat Chromosome Arm Assemblies
Jane Rogers, International Wheat Genome Sequencing Consortium;
Deepali Vasoya, The Genome Analysis Centre;
Darren Heavens, The Genome Analysis Centre;
Adriana Alberti, CEA - Genoscope;
Arnaud Couloux, CEA - Genoscope;
Valerie Barbe, CEA - Genoscope;
Frederic Choulet, INRA GDEC;
Sébastien Theil, INRA GDEC;
Catherine Feuillet, INRA GDEC;
Mario Caccamo, The Genome Analysis Centre;
Matt Clark, The Genome Analysis Centre
3:35 PM
BAC To BAC Based Sequence Assembly Of Bread Wheat Chromosome 7B
Odd-Arne Olsen, Norwegian University of Life Sciences;
Simen R Sandve, Norwegian University of Life Sciences;
Bujie Zhan, Norwegian University of Life Sciences;
Tatiana Belova, Norwegian University of Life Sciences;
Matthew P. Kent, CIGENE, Norwegian University of Life Sciences;
Sigbjørn Lien, CIGENE, Norwegian University of Life Sciences;
Hana Simkova, Institute of Experimental Botany;
M. Kubalaskova, Institute of Experimental Botany;
Jaroslav Doležel, Institute of Experimental Botany;
Federica Cattonaro, Instituto di Genomica Applicata;
Abraham B. Korol, University of Haifa;
Klaus Mayer, Institute of Bioinformatics & Systems Biology, MIPS;
Z. Hu, Beijing Genomics Institute;
L. Li, Beijing Genomics Institute;
J. Min, Beijing Genomics Institute;
J. Chen, Beijing Genomics Institute;
Yong Yang, Beijing Genomics Institute;
Xun Xu, BGI;
Muath Alsheik, Graminor A/S
