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Genome Mapping, Tagging & Characterization: Fruit Species

Date: Monday, January 13, 2014
Time: 7:00 AM-10:00 PM
Room: Grand Exhibit Hall
Improvement of the Grapevine Genome Assembly
Anne-Francoise Adam-Blondon, INRA - URGI; Aurélie Canaguier, INRA-URGV; Simone Scalabrin, Istituto di Genomica Applicata; Marie-Christine Le Paslier, INRA, US1279 Etude du Polymorphisme des Génomes Végétaux, CEA-IG / Centre National de Génotypage; Eric Duchene, INRA-SVQV; Nacer Mohellibi, INRA - URGI; Aurélie Bérard, INRA, US1279 Etude du Polymorphisme des Génomes Végétaux, CEA-IG / Centre National de Génotypage; Aurélie Chauveau, INRA, US1279 Etude du Polymorphisme des Génomes Végétaux, CEA-IG / Centre National de Génotypage; Jean-Michel Boursiquot, SupAgro Montpellier-AGAP; Gabriele Di Gaspero, IGA; Ludger Hausmann, JKI; Jose-Miguel Martinez-Zapater, ICVV; Michele Morgante, IGA Istituto di Genomica Applicata

An Update on Rosaceae Genomes
Amit Dhingra, Department of Horticulture, Washington State University

Application of Genotyping-By-Sequencing in Crosses of Heterozygous Grapevines: Tools for Map Construction and Marker-Trait Association Testing
Paola Barba, Cornell University; Elizabeth M. Takacs, Cornell University; Katie Hyma, Cornell University; Qi Sun, Institute for Genomic Diversity, Cornell University; Lance E. Cadle-Davidson, USDA-ARS Grape Genetics Research Unit; Bruce Reisch, School of Integrative Plant Science, Cornell University

Profiling of Novel and Candidate microRNAs in Grapevine By High Throughput Sequencing
Daniela Lopes Paim Pinto, Scuola Superiore Sant'Anna; Jb Kullan, Scuola Superiore Sant'Anna; E Mica, CRA-GPG, Genomics Research Centre; Blake C. Meyers, University of Delaware; ME Pè, Scuola Superiore Sant'Anna di Pisa; Mario Pezzotti, University of Verona; Marianna Fasoli, University of Verona

Genetic Characterization and Pedigree Validation of Grapevine Hybrids, Donors of Resistance to Downy and Powdery Mildews
Silvia Vezzulli, Fondazione E. Mach, San Michele all’Adige, Italy; Elisa Peressotti, Fondazione E. Mach, San Michele all’Adige, Italy; Elisa Banchi, Fondazione E. Mach, San Michele all’Adige, Italy; Summaira Riaz, University of California Davis; Susanna Micheli, Fondazione E. Mach, San Michele all’Adige, Italy; Andrew Walker, University of California Davis; Bruce Reisch, School of Integrative Plant Science, Cornell University; Marco C.A.M. Bink, Wageningen UR - Biometris; W. Eric Van de Weg, Plant Breeding Wageningen University & Research centre; Francesco Salamini, Fondazione E. Mach, San Michele all’Adige, Italy; Riccardo Velasco, Fondazione E. Mach

Comparative Transcriptomics of Wild North American Vitis Species
Mikhail Osipovitch, University of Rochester; Jacquelyn Lillis, USDA-ARS Grape Genetics Research Unit; Jason Londo, USDA-ARS Grape Genetics Research Unit

Genetic Variation in the Stilbenes Content and Composition of Muscadine Grape Genotypes
Mehboob B Sheikh, Florida A&M University; Devaiah M. Kambiranda, Florida A&M University; Rajya Lakshmi, Florida A&M University

Expressed Haplotypes and Polymorphisms in Prunus Species
Chunxian Chen, USDA, ARS, SEFTNRL; Sook Jung, Washington State University; Dorrie Main, Washington State University

Comparing Apples to Apples: A Genome-Wide Association Study of Sensory and Physical Attributes in Apple
Daryl J. Somers, Vineland Research and Innovation Centre; Beatrice Amyotte, Vineland Research and Innovation Centre; Travis W. Banks, Vineland Research and Innovation Centre; Amy Bowen, Vineland Research and Innovation Centre; David Liscombe, Vineland Research and Innovation Centre

Development of Applied Genomic Tools for Markers Assisted Breeding in Apple
Michela Troggio, Research and Innovation Center; Luca Bianco, Research and Innovation Centre, Edmund Mach Foundation; Elisa Banchi, Fondazione E. Mach, San Michele all’Adige, Italy; Alessandro Cestaro, Research and Innovation Centre, Edmund Mach Foundation; Diego Micheletti, Research and Innovation Centre, Edmund Mach Foundation; Massimo Pindo, Research and Innovation Centre, Edmund Mach Foundation; Daniel J. Sargent, Center for Research and Innovation, Fondazione Edmund Mach; Mario Di Guardo, Fondazione E. Mach; Fabrizio Costa, Fondazione Edmund Mach; W. Eric Van de Weg, Plant Breeding Wageningen University & Research centre; Riccardo Velasco, Fondazione E. Mach

Comparative and Developmental Analysis of Plastid-Targeted Proteins in Malus x domestica (Apple) and Higher Plants
Scott Schaeffer, Department of Horticulture, Washington State University; Artemus Harper, Department of Horticulture, Washington State University; Rajani Raja, Department of Botany & Plant Pathology, Oregon State University; Pankaj Jaiswal, Department of Botany & Plant Pathology, Oregon State University; Amit Dhingra, Department of Horticulture, Washington State University

Identification of Candidate Genes at Rvi19 and Rvi20, Two Apple Scab Resistance Loci in the ‘Honeycrisp’ Apple (Malus x domestica)
Matthew D. Clark, Dept. of Horticultural Science, University of Minnesota; James J. Luby, University of Minnesota; James M. Bradeen, Department of Plant Pathology, University of Minnesota; Vincent G.M. Bus, The New Zealand Institute for Plant & Food Research Limited

Functional Synteny of Susceptibility Genes for Fungal Diseases Caused by Alternaria alternata in Apple and Japanese Pear
Toshiya Yamamoto, NARO Institute of Fruit Tree Science; Shingo Terakami, NARO Institute of Fruit Tree Science; Shigeki Moriya, NARO Institute of Fruit Tree Science; Kenji Nashima, NARO Institute of Fruit Tree Science; Miyuki Kunihisa, NARO Institute of Fruit Tree Science; Chikako Nishitani, NARO Institute of Fruit Tree Science; Ryoji Nakaune, NARO Institute of Fruit Tree Science; Tsutae Ito, NARO Institute of Fruit Tree Science; Yoshihiko Adachi, NARO Institute of Fruit Tree Science; Toshihiro Saito, NARO Institute of Fruit Tree Science; Kazuyuki Abe, NARO Institute of Fruit Tree Science

Fine Mapping and BAC Contigs Construction of a Susceptible Gene to Black Spot Disease in Japanese Pear (Pyrus pyrifolia)
Shingo Terakami, NARO Institute of Fruit Tree Science; Yoshihiko Adachi, NARO Institute of Fruit Tree Science; Kenji Nashima, NARO Institute of Fruit Tree Science; Hiroko Fujisawa, National Institute of Agrobiological Sciences; Jianzhong Wu, National Institute of Agrobiological Sciences; Takashi Matsumoto, National Institute of Agrobiological Sciences; Miyuki Kunihisa, NARO Institute of Fruit Tree Science; Chikako Nishitani, NARO Institute of Fruit Tree Science; Toshihiro Saito, NARO Institute of Fruit Tree Science; Toshiya Yamamoto, NARO Institute of Fruit Tree Science

Development of New Microsatellite Marker in ‘Whangkeumbae’ Pear through Next Generation Sequencing
Seolah Kim, Chungbuk National University; Young-Jae Oh, Chungbuk National University; Ji-Young Park, Chungbuk National University; Sung-Il Oh, Chungbuk National University; Sam-Seok Kang, National Institute of Horticultural & Herbal Science; Yoon-Kyeong Kim, National Institute of Horticultural & Herbal Science; Yong-Uk Shin, National Institute of Horticultural & Herbal Science; Cheol Choi, Kyungpook National University; Sang Eun Han, Solgent Co., Ltd.; Daeil Kim, Chungbuk National University

Post Genome Era: New Insights in Peach Genetic Improvement
Pedro J Martínez-García, Dept. Plant Sciences University of California Davis; Jonathan Fresnedo Ramirez, University of California; Dan E. Parfitt, University of California; Alejandra Vazquez-Lobo, Universidad Nacional Autónoma de México; Eben A. Ogundiwin, University of California; Richard M. Bostock, University of California; Thomas M. Gradziel, University of California; Carlos H. Crisosto, University of California

QTL Analysis for Fruit Quality Traits in Peach [Prunus persica (L.) Batsch]
Gerardo Nuñez, Center of Plant Biotechnology. Andres Bello University; Michela Troggio, Research and Innovation Center, Fondazione Edmund Mach; Rodrigo Infante, Dept Plant Sci - U de Chile; Reinaldo Campos-Vargas, Center of Plant Biotechnology. Andres Bello University; Ariel Orellana, Centro de Biotecnologia Vegetal, Universidad Andres Bello; Claudio Meneses, Center of Plant Biotechnology. Andres Bello University

Marker Assisted Breeding for Red Skin Coloration in Peach
Ksenija Gasic, Clemson University; Rachel Quick, SC-GSSM; Asma Abdelghafar, Clemson University; Terrence Frett, University of Arkansas; Brad Rauh, Clemson University; Gregory Reighard, Clemson University

Characterization of Carotenoids Composition and Content in Fruits of Different Apricot Cultivars
Tal Isaacson, Agricultural Research Organization; Matat Zohar, Agricultural Research Organization

A High Density Linkage Map for the Ancestral Diploid Strawberrry Fragaria iinumae using Markers from the ISTRAW90® SNP Array and GBS
Lise L. Mahoney, University of New Hampshire; Daniel J. Sargent, Fondazione E. Mach; Judson Ward, Driscoll Strawberry Associates, Inc.; James F. Hancock, Michigan State University; Kevin M. Folta, University of Florida; Dave J. Wood, University of New Hampshire; Hailong Zhang, University of New Hampshire; Michael Mittmann, Affymetrix Inc.; Nahla Bassil, USDA/ARS, NCGR; Thomas M. Davis, University of New Hampshire

Increasing Strawberry Nutritional Quality:  Marker Assisted Selection Based on Co-Localization of mQTLs and e-QTLs Linked to Fruit Polyphenol Content
Amparo Monfort, IRTA, Centre for Research in Agricultural Genomics CSIC-IRTA-UAB-UB; Octavio Serra, Center for Research in Agricultural Genomics; Carmen Villatoro, Center for Research in Agricultural Genomics; Miguel A. Hidalgo, PLANASA; Juan Muñoz-Blanco, Universidad de Cordoba; Wilfried Schwab, Technische Universität München

Characterization of Red and White Colored Strawberries Including a New White Colored Fragaria Accession on DNA, RNA and Protein Level
Rene Kaiser, University of Rostock; Vera Mageney, University of Rostock; Konrad Schwefel, University of Rostock; Aenne Krüger, University of Rostock; Gunnar Haese, University of Rostock; Rikard Alm, Lund University; Cecilia Emanuelsson, Lund University; Renate Horn, University of Rostock

Genomic Survey Sequences and the Structure of the Rubus chamaemorus L. and Rubus arcticus L. Genomes As Determined By Double Digest Restriction Associated Digest-(ddRAD) Tags
Adam Vivian-Smith, Norwegian Forest and Landscape Institute/Bioforsk; Jørn Henrik Sønstebø, Norwegian Forest and Landskap Institute; Thomas Marcussen, Norwegian University of Life Sciences (UMB); Eivind Uleberg, Bioforsk; Julie Graham, The James Hutton Institute; Anita Sønsteby, Bioforsk; Inger Martinussen, Bioforsk

Transposable Elements as a Source of Variation in Citrus
Javier Terol, Centro de Genomica, IVIA; Victoria Ibañez, Centro de Genomica IVIA; Roberto Alonso, Institute for Genomcis and Computational Medicine, CIPF; Jose Carbonell, Institute for Genomcis and Computational Medicine, CIPF; Joaquin Dopazo, Institute for Genomcis and Computational Medicine, CIPF; Manuel Talon, Centro de Genomica, IVIA

Development of Molecular Markers for Mandarin Flavors and Colors using a High-Throughput GoldenGate Assay
Yuan Yu, University of Florida, IFAS-Horticultural Sciences; Chunxian Chen, University of Florida, IFAS-CREC; Jinhe Bai, USDA-ARS, U. S. Horticultural Research Laboratory; Anne Plotto, USDA-ARS, U. S. Horticultural Research Laboratory; Elizabeth A. Baldwin, USDA-ARS, U. S. Horticultural Research Laboratory; Fred G. Gmitter, University of Florida, IFAS-CREC

Citrus Breeding: Genetic Mapping and Localization of QTL for  Leprosis
Mariangela Cristofani-Yaly, Centro de Citricultura Sylvio Moreira, IAC; Maria Andreia Nunes, Centro de Citricultura Sylvio Moreira, IAC; Evandro Henrique Schinor, Centro de Citricultura Sylvio Moreira, IAC; José Antonio Alberto da Silva, Pólo Regional da Alta Mogiana - APTA; Valdenice Moreira Novelli, Centro de Citricultura Sylvio Moreira, IAC; Marcos Antonio Machado, Centro de Citricultura Sylvio Moreira, IAC; Marinês Bastianel, Centro de Citricultura Sylvio Moreira, IAC

Identification of QTL Associated with Citrus Tolerance to HLB Caused By ‘Candidatus Liberibacter asiaticus’
Leonardo P. Boava, Centro de Citricultura Sylvio Moreira, IAC; Cíntia H. D. Sagawa, Centro de Citricultura Sylvio Moreira, IAC; Samanta Marengo, Centro de Citricultura Sylvio Moreira, IAC; Andrzej Kilian, Diversity Arrays Technology Pty Ltd; Mariangela Cristofani-Yaly, Centro de Citricultura Sylvio Moreira, IAC; Marcos Antonio Machado, Centro de Citricultura Sylvio Moreira, IAC

Analysis of Defense-Related Gene Expression in New Citrus Hybrids Resistant to Citrus Variegated Chlorosis and eQTL Mapping
Fernanda Nara Maurício, Centro de Citricultura 'Sylvio Moreira' - IAC; Cíntia H. D. Sagawa, Centro de Citricultura Sylvio Moreira, IAC; Daniel Bedo Assumpção Castro, CBMEG, State University of Campinas; Leonardo P. Boava, Centro de Citricultura Sylvio Moreira, IAC; José Antonio Alberto da Silva, Pólo Regional da Alta Mogiana - APTA; Marcos Antonio Machado, Centro de Citricultura Sylvio Moreira, IAC; Ane Hackbart de Medeiros, Universidade Federal de São Carlos; Mariangela Cristofani-Yaly, Centro de Citricultura Sylvio Moreira, IAC

Identification and Validation of RNA Silencing Associated Genes in Citrus sinensis
Will Cody, Texas A&M University; Kranthi K. Mandadi, Texas A&M AgriLife Research; T. Erik Mirkov, Texas A&M University; Herman B. Scholthof, Texas A&M University

Comprehensive Phylogenetic Analysis of MADS-box Family in Citrus
Marcos Antonio Machado, Centro de Citricultura Sylvio Moreira, IAC; Valéria Mafra, Centro de Citricultura Sylvio Moreira, IAC; Andreia Carina Turchetto-Zolet, UFRGS; Elisson Romanel, UFRGS; Marcio Alves-Ferreira, Universidade Federal do Rio de Janeiro

Chloroplast DNA Sequences in Species Characterisation in the Genus Citrus from North-East India
Marlykynti Hynniewta, North-Eastern Hill University; Rama Rao Satyawada, North-Eastern Hill University

Using Genotyping-By-Sequencing to Understand Musa Diversity
Agnes P Chan, J. Craig Venter Institute; Xavier Perrier, CIRAD, Montpellier, France; Julie Sardos, Bioversity International; Christophe Jenny, CIRAD, UMR AGAP; Jean-Pierre Jacquemoud-Collet, CIRAD, Montpellier, France; Nicolas Roux, Bioversity International; Christopher D. Town, J. Craig Venter Institute

Gene Sequences Present in Citrullus sp. and having been Lost during Domestication of Watermelon
Amnon Levi, USDA ARS, U.S. Vegetable Laboratory; Patrick Wechter, USDA-ARS; Laura Massey, USDA, ARS, U.S. Vegetable Laboratory; Ryan Donahoo, USDA, ARS, U.S. Vegetable Laboratory; Robert Jarret, USDA, ARS, PLANT GENETIC RESOURCES CONSERVATION UNIT; Padma Nimmakayala, Department of Biology, West Virginia State University; Umesh K. Reddy, Department of Biology, West Virginia State University; Zhangjun Fei, Cornell University

Targeting a Resistance Gene Associated with Fusarium Wilt in Banana
Elizabeth Aitken, The University of Queensland; Sam Fraser Smith, University of Queensland; Manuel Matias Zander, University of Queensland; Jessica Dalton-Morgan, University of Queensland; Pradeep Ruperao, University of Western Australia; David Edwards, University of Queensland; Sharon Hamill, Queensland Dept of Agriculture, Fisheries and Forestry; Mike K Smith, Queensland Dept of Agriculture, Fisheries and Forestry; Jacqueline Batley, University of Queensland

Development of Pineapple (Ananas comosus L.) Genetic Map with Restriction Site Associated DNA (RAD) Markers
Ching Man Wai, University of Illinois at Urbana-Champaign; Robert VanBuren, University of Illinois at Urbana-Champaign; MingLi Wang, Hawaii Agriculture Research Center; Haibao Tang, University of Arizona; Michael Schatz, Cold Spring Harbor Labrotary; Romain Guyot, UMR DIADE; Robert E. Paull, University of Hawaii at Manoa; Qingyi Yu, Texas A&M AgriLife Research; Ray Ming, University of Illnois at Urbana-Chamapaign

Genome Sequencing of American Cranberry
Nicholi Vorsa, Rutgers University

Epigenetic Control Over Several Quantitative Traits in Strawberry (Fragaria vesca)
Jihua Xu, University of Saskatchewan; Karen Tanino, University of Saskatchewan; Stephen J Robinson, Agriculture and Agri-Food Canada

Re-Annotation of the Strawberry (Fragaria vesca) Genome
Omar Darwish, Towson University; Zhongchi Liu, University of Maryland; Janet P. Slovin, USDA/ARS Genetic Improvement of Fruit and Vegetables Lab; Nadim Alkharouf, Towson University

RNA-Seq of Mangifera indica L. Mesocarp as a Tool to Identify Genes Related to Loss of Firmness
Maria A. Islas-Osuna, CIAD Centro de Investigación en Alimentación Desarrollo A.C.; Mitzuko Dautt-Castro, CIAD Centro de Investigación en Alimentación Desarrollo A.C.; Carmen Contreras-Vergara, CIAD Centro de Investigación en Alimentación Desarrollo A.C.; Alejandro Sanchez-Flores, UNAM

The Vanilla Sustainability Project: Genomics Research on Vanilla planifolia for Crop Improvement and Sustainable Agriculture
Sharman D. O'Neill, University of California, Davis; Spencer Little, University of California, Davis; Alan Yip, University of California, Davis; Garrett Cunha, University of California, Davis; Ryan Kim, Korea Institute of Bioscience and Biotechnology; Henriette O'Geen, UC Davis Genome Center; Monica T. Britton, UC Davis Genome Center; Blythe Durbin-Johnson, UC Davis Genome Center; Joseph Fass, UC Davis Genome Center; Ian Korf, UC Davis Genome Center; Juan Hernandez Hernandez, INIFAP; Aro Vonjy Ramarosandratana, University of Antananarivo

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