2173IWGSC - Standards and Protocols
Update activity on wheat genome sequencing activity with a focus on data standards and new protocols being developed
Date: Tuesday, January 14, 2014
Time: 1:30 PM-6:10 PM
Room: Pacific Salon 3
Organizers:
Jane Rogers
and
Catherine Feuillet
1:30 PM
Using LTC Software for Wheat Physical Mapping: Increasing Contig Lengths and MTP Quality
Zeev M. Frenkel, University of Haifa, Institute of Evolution;
Vladimir A. Glikson, MultiQTL Ltd.;
Dina Raats, University of Haifa, Institute of Evolution;
Bujie Zhan, Norwegian University of Life Sciences;
Tatiana Belova, Norwegian University of Life Sciences;
Etienne Paux, INRA GDEC;
Tzion Fahima, University of Haifa, Institute of Evolution;
Catherine Feuillet, INRA GDEC;
Odd-Arne Olsen, Norwegian University of Life Sciences;
Simen Rød Sandve, Norwegian University of Life Sciences;
Abraham B. Korol, University of Haifa, Institute of Evolution
1:50 PM
Assembling a Pseudomolecule for a Wheat Chromosome: The 3B Experience
Frederic Choulet, INRA GDEC;
Adriana Alberti, CEA - Genoscope;
Valerie Barbe, CEA - Genoscope;
Sébastien Theil, INRA GDEC;
Pierre Sourdille, INRA GDEC;
François Balfourier, INRA GDEC;
Jean-Marc Aury, CEA - Genoscope;
Hélène Bergès, INRA - CNRGV;
Jaroslav Doležel, Institute of Experimental Botany;
Hadi Quesneville, INRA - URGI;
Patrick Wincker, CEA - Genoscope;
Catherine Feuillet, INRA GDEC
2:10 PM
Strategy Developments for Wheat Chromosome MTP Sequencing
Valerie Barbe, CEA - Genoscope;
Adriana Alberti, CEA - Genoscope;
Arnaud Couloux, CEA - Genoscope;
Frederic Choulet, INRA GDEC;
Céline Durand, CEA - Genoscope;
Sophie Mangenot, CEA - Genoscope;
Etienne Paux, INRA GDEC;
Catherine Feuillet, INRA GDEC;
Patrick Wincker, CEA - Genoscope
2:30 PM
Toward the Reference Genome Sequence of Wheat Chromosome 6B; BAC-By-BAC Sequencing and Assembling
Hirokazu Handa, National Institute of Agrobiological Sciences;
Hiroyuki Kanamori, National Institute of Agrobiological Sciences;
Fuminori Kobayashi, National Institute of Agrobiological Sciences;
Jun Kawai, RIKEN PMI;
Jianzhong Wu, National Institute of Agrobiological Sciences;
Shuhei Nasuda, Graduate School of Agriculture, Kyoto University;
Jaroslav Doležel, Institute of Experimental Botany;
Yasunari Ogihara, Kihara Inst. Biol. Res., Yokohama City University;
Takashi Matsumoto, National Institute of Agrobiological Sciences
3:10 PM
An Optimised Approach to Sequence and Assemble BACs: Application to Bread Wheat Chromosome Arm 7DS
Paul Visendi, University of Queensland;
Philipp Emanuel Bayer, University of Queensland;
Agnieszka Golicz, University of Queensland;
Helena Stankova, Institute of Experimental Botany;
Satomi Hayashi, University of Queensland;
Paul J. Berkman, CSIRO Plant Industry;
Pradeep Ruperao, University of Western Australia;
Bhavna Hurgobin, University of Queensland;
Kenneth Chan, University of Queensland;
Jaroslav Doležel, Institute of Experimental Botany;
Hana Simkova, Institute of Experimental Botany;
Jacqueline Batley, University of Queensland;
David Edwards, University of Queensland
4:10 PM
Wheat Genomics Resources at Ensembl Plants
Paul J. Kersey, EMBL - The European Bioninformatics Institute;
Arnaud Kerhornou, EMBL-The European Bioinformatics Institute;
Dan Bolser, EMBL - The European Bioinformatics Institute
