2680Pine Genome Reference Sequence
The workshop will focus on the progress and applications of aspects of the Loblolly Pine Genome Project (aka PineRefSeq Project), a USDA-NIFA-funded project to produce reference genome sequences of three conifer species: loblolly pine (Pinus taeda), sugar pine (P. lambertiana), and Douglas-fir (Pseudotsuga menziesii).
Date: Saturday, January 10, 2015
Time: 8:00 AM-12:40 PM
Room: Pacific Salon 6-7 (2nd Floor)
8:30 AM
A Reference Genome Sequence for Sugar Pine
Kristian Stevens, Department of Evolution and Ecology, University of California, Davis;
Jill Wegrzyn, Department of Ecology and Evolutionary Biology, University of Connecticut;
Marc Crepeau, Department of Evolution and Ecology, University of California, Davis;
Daniela Puiu, Johns Hopkins University, School of Medicine;
Aleksey Zimin, Institute for Physical Science and Technology, University of Maryland;
Charis Cardeno, University of California, Davis;
Ann Holtz-Morris, Children's Hospital Oakland Research Institute;
Maxim Koriabine, Children's Hospital Oakland Research Institute;
Pedro J Martínez-García, Department of Plant Sciences University of California;
Pieter J. deJong, Children's Hospital Oakland Research Institute;
James A Yorke, University of Maryland;
Steven L Salzberg, Johns Hopkins University, School of Medicine;
Charles H. Langley, Department of Evolution and Ecology, University of California, Davis;
David Neale, Dept. Plant Sciences University of California Davis
9:00 AM
Sugar Pine Annotation
Jill Wegrzyn, Department of Ecology and Evolutionary Biology - University of Connecticut;
Kristian Stevens, Department of Evolution and Ecology, University of California, Davis;
Robin Paul, Department of Ecology and Evolutionary Biology, University of Connecticut;
Daniel Gonzalez-Ibeas, Department of Ecology and Evolutionary Biology, University of Connecticut;
Pedro J Martínez-García, Department of Plant Sciences University of California;
John Liechty, Department of Plant Sciences, University of California, Davis;
Hans Vasquez-Gross, University of California Davis;
Sowmya Kuruganti, Department of Ecology and Evolutionary Biology, University of Connecticut;
Emily Grau, UC Davis;
Carol Loopstra, Texas A&M University;
Aleksey Zimin, Institute for Physical Science and Technology, University of Maryland;
James A. Yorke, University of Maryland;
Marc Crepeau, Department of Evolution and Ecology, University of California, Davis;
Daniela Puiu, Johns Hopkins University, School of Medicine;
Carson Holt, University of Utah;
Mark Yandell, USTAR Center for Genetic Discovery, University of Utah;
Steven L Salzberg, Johns Hopkins University, School of Medicine;
Pieter J. deJong, Children's Hospital Oakland Research Institute;
Keithanne Mockaitis, Indiana University;
Dorrie Main, Washington State University;
Charles H. Langley, Department of Evolution and Ecology, University of California, Davis;
David Neale, Dept. Plant Sciences University of California Davis
10:30 AM
GenSAS
Dorrie Main, Washington State University;
Stephen P. Ficklin, Washington State University;
Taein Lee, WSU;
Jodi L. Humann, Washington State University;
Chun-Huai Cheng, Washington State University;
Jill Wegrzyn, Department of Ecology and Evolutionary Biology, University of Connecticut;
David Neale, Dept. Plant Sciences University of California Davis
11:30 AM
The Alluring Simplicity and Complex Reality of Adaptation to Climate in Lodgepole Pine
Sally N. Aitken, University of British Columbia;
Sam Yeaman, University of British Columbia;
Kathryn A. Hodgins, Monash University;
Katie Lotterhos, Wake Forest University;
Haktan Suren, Virginia Tech University;
Kristin Nurkowski, Monash University;
Jason Holliday, Virginia Tech University;
Loren H. Rieseberg, University of British Columbia;
Andreas Hamann, University of Alberta;
Michael C. Whitlock, University of British Columbia
