2703
Sequencing Complex Genomes

This workshop reviews progress in sequencing complex genomes. Advances in technology and examples of applications to complex genome sequencing are presented.
Date: Sunday, January 11, 2015
Time: 4:00 PM-6:10 PM
Room: Golden Ballroom
Organizer:
Robert Henry
4:00 PM
W710
The International Coffea Genome13 Project: A Way to Understand the Evolutionary History of Coffea Genomes and Unlock the Potential Use of Wild Species in Breeding?
Perla Hamon, IRD UMR DIADE

4:20 PM
W711
Evolutionary Origins and Dynamics of Octoploid Strawberry Subgenomes Revealed By Dense Targeted Capture Linkage Maps
Jacob Tennessen, Oregon State University; Rajanikanth Govindarajulu, University of Pittsburgh; Tia-Lynn Ashman, University of Pittsburgh; Aaron Liston, Oregon State University

PDF file
4:40 PM
W712
De Novo Assembly of Plant Genomes: Hybrid Approaches for Heterogeneous NGS Data
Thiru Ramaraj, National Center for Genome Resources

5:00 PM
W713
A whole-genome shotgun approach for assembling and anchoring the hexaploid bread wheat genome
Jarrod Chapman, DOE Joint Genome Institute; Martin Mascher, IPK Gatersleben; Aydın Buluç, Department of Energy Joint Genome Institute; Kerrie W. Barry, DOE Joint Genome Institute; Evangelos Georganas, Lawrence Berkeley National Laboratory; Adam Session, University of California; Veronika Strnadova, Department of Computer Science, University of California; Jerry Jenkins, DOE Joint Genome Institute; Sunish K. Sehgal, Kansas State University; Leonid Oliker, Lawrence Berkeley National Laboratory; Jeremy Schmutz, HudsonAlpha Institute for Biotechnology; Katherine Yelick, Lawrence Berkeley National Laboratory; Uwe Scholz, Institute of Plant Genetics and Crop Plant Research (IPK); Robbie Waugh, The James Hutton Institute; Jesse Poland, Kansas State University; Gary J. Muehlbauer, Department of Plant Biology, University of Minnesota; Nils Stein, Leibniz Institute of Plant Genetics and Crop Plant Research (IPK); Daniel S. Rokhsar, DOE Joint Genome Institute

5:20 PM
W714
Toward a Reference Sequence of the Gene-Rich Part of the Highly Polyploid Sugarcane Genome
Olivier Garsmeur, CIRAD, UMR AGAP; Bernard Potier, South African Sugarcane Research Institute; Karen S. Aitken, CSIRO Agriculture; Paul J. Berkman, CSIRO Plant Industry; Gaëtan Droc, CIRAD, UMR AGAP; Carine Charron, CIRAD, UMR AGAP; Guillaume Martin, CIRAD, UMR AGAP; Bandie Harrison, Amplicon Express; Edwin van der Vossen, Keygene; Robert Henry, University of Queensland QAAFI; Angélique D'Hont, CIRAD, UMR AGAP

5:40 PM
W715
Elucidating Intra-Species Genome Complexity By Using a Novel De Novo Assembly Tool to Assemble Two Maize Inbred Lines
Nissim Yonash, NRGENE; Guy Kol, NRGENE Ltd.

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