Talks and demonstrations about software and online resources for supporting and advancing research.
Date: Tuesday, January 13, 2015
Time: 10:30 AM-12:40 PM
Room: California
Organizers:
Dave Clements
and
Brian Smith-White
10:30 AM
GnpIS-Asso : A Generic Database for Managing and Exploiting Plant Genetic Association Studies Results Using High Throughput Genotyping and Phenotyping Data
Delphine Steinbach, INRA - URGI;
Guillaume Merceron, INRA URGI;
Célia Michotey, INRA - URGI;
Raphael Flores, INRA - URGI;
Nacer Mohellibi, INRA - URGI;
Cyril Pommier, INRA - URGI;
Christopher Sauvage, INRA GAFL;
Stephane Nicolas, INRA UMRGV;
Pierre Dubreuil, Biogemma compagny;
Jacques Le Gouis, INRA GDEC
11:00 AM
Wheat3BMine, a Data Warehouse Dedicated to Wheat Chromosome 3B
Thomas Letellier, INRA - URGI;
Loic Couderc, INRA - URGI;
Frederic Choulet, INRA GDEC;
Manuel Spannagl, Helmholtz Center Munich - Plant Genome and Systems Biology;
Cyril Pommier, INRA - URGI;
Josep Lluis Gelpi Buchaca, Universitat de Barcelona;
Paul J. Kersey, EMBL - The European Bioinformatics Institute;
Hadi Quesneville, INRA - URGI;
Delphine Steinbach, INRA - URGI;
Michael Alaux, INRA - URGI
11:15 AM
Using the Wheat Tilling Database to Search Mutants of Interest
Hans Vasquez-Gross, Department of Plant Sciences, University of California, Davis;
Ksenia Krasileva, University of California Davis;
Francine Paraiso, University of California Davis;
Xiaodong Wang, University of California Davis;
Tyson R. Howell, University of California Davis;
Paul C. Bailey, The Genome Analysis Centre;
Sarah Ayling, The Genome Analysis Centre;
Cristobal Uauy, John Innes Centre;
Jorge Dubcovsky, University of California
11:30 AM
TreeGenes and CartograTree: Tools for Forest Tree Genomics
Emily Grau, UC Davis;
Hans Vasquez-Gross, University of California Davis;
John Liechty, Department of Plant Sciences, University of California, Davis;
Jacob Zieve, University of California, Davis;
Damian Gessler, University of Arizona;
David Neale, Dept. Plant Sciences University of California Davis;
Jill Wegrzyn, Department of Ecology and Evolutionary Biology, University of Connecticut
12:00 PM
National Center for Biotechnology Information Resources for Plant Genomics
Brian Smith-White, National Center for Biotechnology Information (NCBI/NLM/NIH);
Svetlana Iazvovskaia, NCBI;
Anjana Raina Vatsan, National Center for Biotechnology Information (NCBI/NLM/NIH);
Terence Murphy, NIH/NLM/NCBI;
Ilene Mizrachi, National Center for Biotechnology Information (NCBI/NLM/NIH);
Valerie Schneider, National Center for Biotechnology Information (NCBI/NLM/NIH);
Kim D. Pruitt, National Center for Biotechnology Information (NCBI/NLM/NIH)
12:30 PM
Using the Arabidopsis Information Portal
Jason R. Miller, J. Craig Venter Institute;
Chia-Yi Cheng, J. Craig Venter Institute;
Benjamin D. Rosen, J. Craig Venter Institute;
Vivek Krishnakumar, J. Craig Venter Institute;
Erik Ferlanti, J. Craig Venter Institute;
Svetlana Karamycheva, J. Craig Venter Institute;
Maria Kim, J. Craig Venter Institute;
Matt Hanlon, Texas Advanced Computing Center;
Walter Moreira, Texas Advanced Computing Center;
Steve Mock, Texas Advanced Computing Center;
Joe Stubbs, Texas Advanced Computing Center;
Rion Dooley, Texas Advanced Computing Center;
Sergio Contrino, Cambridge University;
Julie Sullivan, Cambridge University;
Alex Kalderimis, Cambridge University;
Gos Micklem, Cambridge University;
Matt Vaughn, Texas Advanced Computing Center;
Christopher D. Town, J. Craig Venter Institute
