W819
High Quality Draft Genomes of Medicago truncatula & Gossypium herbaceum using NGS, Dovetail & BioNano Technologies

Date: Sunday, January 10, 2016
Time: 4:20 PM
Room: Golden Ballroom
Thiruvarangan Ramaraj , National Center for Genome Resources (NCGR), Santa Fe, NM
Nicolas Devitt , National Center for Genome Resources (NCGR), Santa Fe, NM
Diego A. Fajardo , National Center for Genome Resources (NCGR), Santa Fe, NM
Karen M. Moll , National Center for Genome Resources (NCGR), Santa Fe, NM
Aaron Sharp , Brigham Young University, Provo, UT
Kevin AT Silverstein , Supercomputing Institute, University of Minnesota, Minneapolis, MN
Jason R. Miller , J. Craig Venter Institute, Rockville, MD
Josh Udall , Brigham Young University, Provo, UT
Nevin D. Young , Department of Plant Pathology, University of Minnesota, St. Paul, MN
Joann Mudge , National Center for Genome Resources (NCGR), Santa Fe, NM
Here we present a high quality draft genome of Medicago truncatula (HM340), a model plant for studying legume symbioses and Gossypium herbaceum (cv. Wagad), a A-genome diploid from the Old World with genome sizes of approximately 0.5 & 1.7 Gbp respectively using a multi-platform sequencing strategy (Illumina HiSeq, PacBio RS II, Dovetail Genomics, and BioNano Whole Genome Maps). The multi-platform sequencing strategy will help immensely in achieving high quality de novo reconstructions of genomes, which requires accurate long-range contiguity. Using hybrid sequencing and analysis will not only provide high quality reference genomes which is a necessary foundation for several biological discoveries but also will aid in assessing recent technologies such as Dovetail Genomics and BioNano Genomics and also serve as a model to the plant genomics community who has an interest in using multi-platform sequencing technologies for de novo genome sequencing.