P0286
Araport - A Community Platform for Data Sharing, Discovery and Integration

Agnes P Chan , J. Craig Venter Institute, Rockville, MD
Vivek Krishnakumar , J. Craig Venter Institute, Rockville, MD
Chia-Yi Cheng , J. Craig Venter Institute, Rockville, MD
Irina Belyaeva , J. Craig Venter Institute, Rockville, MD
Sergio Contrino , Cambridge University, Cambridge, United Kingdom of Great Britain and Northern Ireland
Erik Ferlanti , J. Craig Venter Institute, Rockville, MD
Seth Schobel , J. Craig Venter Institute, Rockville, MD
Matt Hanlon , Texas Advanced Computing Center, Austin, TX
Walter Moreira , Texas Advanced Computing Center, Austin, TX
Joe Stubbs , Texas Advanced Computing Center, Austin, TX
Rion Dooley , Texas Advanced Computing Center, Austin, TX
Steve Mock , Texas Advanced Computing Center, Austin, TX
Gos Micklem , Cambridge University, Cambridge, United Kingdom of Great Britain and Northern Ireland
Jason R. Miller , J. Craig Venter Institute, Rockville, MD
Matthew Vaughn , Texas Advanced Computing Center, Austin, TX
Christopher D. Town , J. Craig Venter Institute, Rockville, MD
Araport (https://www.araport.org) aims to to provide Arabidopsis and plant scientists direct access to a new generation web-based data platform. Users can browse and analyze a wide array of data through Araport.  Users can also publish their own modules for sharing data with the community or building analysis workflows.

ThaleMine houses a wide array of Arabidopsis genomic information including the latest gene structures and functional annotation, coexpression, orthologs, interactions, pathways, publications, germplasm, phenotypes, etc.  Users can browse gene reports, run gene list enrichment analysis, export data tables, and save or share their work.

JBrowse hosts close to 100 data tracks that include data sources accessed in real-time. Examples include the latest gene structures, RNA-seq, T-DNA and TDNA-seq, 1001 genomes variants, whole-genome alignments, etc. Users can also upload and view their own data (BAM or GFF files) for side-by-side viewing.

Science Apps consist of  a growing collection of data or analysis modules that will serve as building blocks for creating discovery workflows.  The modules will be built and shared by the research community for interoperability and reuse. Users are encouraged to provide feedback on modules that they might need or could contribute.

Araport11 annotation contains comprehensive updates to both gene structures and functions of the Col-0 genome using public RNA-seq data, and has recently been completed and submitted to NCBI for final review.  The latest Araport11 data release can be accessed via Araport.

Araport tutorials are available at, https://www.araport.org/tutorials.

Araport is supported by the NSF and the BBSRC.

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