Araport - A Community Platform for Data Sharing, Discovery and Integration Agnes P Chan, J. Craig Venter Institute;
Vivek Krishnakumar, J. Craig Venter Institute;
Chia-Yi Cheng, J. Craig Venter Institute;
Irina Belyaeva, J. Craig Venter Institute;
Sergio Contrino, Cambridge University;
Erik Ferlanti, J. Craig Venter Institute;
Seth Schobel, J. Craig Venter Institute;
Matt Hanlon, Texas Advanced Computing Center;
Walter Moreira, Texas Advanced Computing Center;
Joe Stubbs, Texas Advanced Computing Center;
Rion Dooley, Texas Advanced Computing Center;
Steve Mock, Texas Advanced Computing Center;
Gos Micklem, Cambridge University;
Jason R. Miller, J. Craig Venter Institute;
Matthew Vaughn, Texas Advanced Computing Center;
Christopher D. Town, J. Craig Venter Institute
Prometheus: Omics Portal for Comparative Genomics Seongjin Park, Korea Research Institute Bioscience and Biotechnology(KRIBB);
Yong-Min Kim, Korea Bioinformation Center, Korea Research Institute of Bioscience and Biotechnology;
Insu Jang, Korea Research Institute of Bioscience and Biotechnology;
Yong Jin Jeon, Korea Research Institute of Bioscience and Biotechnology
Database Resources of DNA Data Bank of Japan Yuichi Kodama, DNA Data Bank of Japan;
Jun Mashima, DNA Data Bank of Japan;
Eli Kaminuma, Genome Informatics Laboratory, NIG, ROIS;
Osamu Ogasawara, DNA Data Bank of Japan;
Kousaku Okubo, DNA Data Bank of Japan;
Yasukazu Nakamura, DNA Data Bank of Japan;
Toshihisa Takagi, DNA Data Bank of Japan
Plant Genome Database Japan (PGDBj) in 2016: A Comprehensive Database Covering Information of Plant Genome-Related Database in Japan Hisako Ichihara, Kazusa DNA Research Institute;
Sachiko Shirasawa, Kazusa DNA Research Institute;
Taeko Shibaya, Kazusa DNA Research Institute;
Yasukazu Nakamura, Kazusa DNA Research Institute;
Akihiro Nakaya, Graduate School of Medicine, Osaka University;
Masataka Kikuchi, Osaka University;
Erika Asamizu, Ryukoku University;
Hideki Hirakawa, Kazusa DNA Research Institute;
Satoshi Tabata, Kazusa DNA Research Institute
dbSNP and dbVar: NCBI Databases of Simple and Structural Variations for All Organisms Lon Phan, NIH/NLM/NCBI;
Ming Ward, NIH/NLM/NCBI;
Hua Zhang, NIH/NLM/NCBI;
Qiang Wang, NIH/NLM/NCBI;
Rama Maiti, NIH/NLM/NCBI;
David Shao, NIH/NLM/NCBI;
Eugene Shekhtman, NIH/NLM/NCBI;
Juliana Sampson, NIH/NLM/NCBI;
Tim Hefferon, NIH;
John Garner, NIH/NLM/NCBI;
John Lopez, NIH/NLM/NCBI
Curation of Genome Assemblies by NCBI Tools and Resources Tayebeh Rezaie, National Center for Biotechnology Information (NCBI/NLM/NIH);
Clifford O. Clausen, National Center for Biotechnology Information (NCBI/NLM/NIH);
Nathan Bouk, National Center for Biotechnology Information (NCBI/NLM/NIH);
Hsiu-Chuan Chen, National Center for Biotechnology Information (NCBI/NLM/NIH);
Valerie A. Schneider, National Center for Biotechnology Information (NCBI/NLM/NIH)
Efficient Curation of Gene Banks Using Next-Generation Sequencing Narinder Singh, Interdepartmental Genetics, Wheat Genetics Resource Center, Kansas State University;
Shuangye Wu, Wheat Genetics Resource Center, Department of Plant Pathology, Kansas State University;
John Raupp, Wheat Genetics Resource Center, Department of Plant Pathology, Kansas State University;
Bikram S. Gill, Kansas State University;
Jesse Poland, Kansas State University
Using GFF for Genome Annotation Submissions to GenBank Terence D. Murphy, National Center for Biotechnology Information, NLM, NIH;
Karen Clark, National Center for Biotechnology Information, NLM, NIH;
Frank Ludwig, National Center for Biotechnology Information, NLM, NIH;
Vincent Calhoun, National Center for Biotechnology Information, NLM, NIH;
Sergiy Gotvyanskyy, National Center for Biotechnology Information, NLM, NIH;
Colleen Bollin, National Center for Biotechnology Information, NLM, NIH
Deliver Searchable Genomic, Genetic and Related Data Online Using Tripal Stephen P. Ficklin, Washington State University;
Lacey-Anne Sanderson, University of Saskatchewan;
Chun-Huai Cheng, Washington State University;
Brian Soto, Washington State University;
Connor Wytko, Washington State University;
Sook Jung, Washington State University;
Alex Feltus, Genetics & Biochemistry, Clemson University;
Kirstin Bett, University of Saskatchewan;
Dorrie Main, Washington State University
iPTMnet: An Integrated Resource for Protein Post-Translational Modification Network Discovery Jung-Youn Lee, Plant and Soil Sciences – University of Delaware;
Hongzhan Huang, Center Bioinformatics & Comp Bio – University of Delaware;
Jia Ren, University of Delaware;
Cecilia Arighi, CBCB – University of Delaware;
Karen Ross, Georgetown University Medical Ctr.;
Gang Li, Center Bioinformatics & Comp Bio – University of Delaware;
Catalina Oana Tudor Tudor, Center Bioinformatics & Comp Bio – University of Delaware;
Mengxi LV, University of Delaware;
Vijay Shanker, University of Delaware;
Cathy H. Wu, CBCB, University of Delaware
GSP: A Web-Based Platform for Designing Genome-Specific Primers in Polyploids Yong Q. Gu, USDA ARS, Western Regional Research Center;
Yi Wang, USDA ARS, Western Regional Research Center;
Vijay K. Tiwari, Kansas State University;
Nidhi Rawat, Kansas State University;
Bikram S. Gill, Kansas State University;
Naxin Huo, USDA ARS, Western Regional Research Center;
Frank M. You, Agriculture and Agri-Food Canada;
Devin Coleman-Derr, Plant Gene Expression Center, USDA-ARS
ORCAE: Online Resource for Community Annotation of Eukaryotes Lieven Sterck, VIB Ghent University, Department of Plant Biotechnology and Bioinformatics;
Stephane Rombauts, VIB Ghent University, Department of Plant Biotechnology and Bioinformatics;
Pierre Rouzé, VIB Ghent University, Department of Plant Biotechnology and Bioinformatics;
Yves Van de Peer, VIB Ghent University, Department of Plant Biotechnology and Bioinformatics
Search Functionality Intended for Medical Research in a Bioresource Database Mika Nagahora, National Institute of Genetics;
Haruka Kouyama, National Institute of Genetics;
Tohru Watanabe, National Institute of Genetics;
Hiroki Watanabe, National Institute of Genetics;
Gaku Kimura, National Institute of Genetics;
Yukiko Yamazaki, National Institute of Genetics
Planteome: A Resource for Common Reference Ontologies and Applications for Plant Biology Pankaj Jaiswal, Department of Botany & Plant Pathology, Oregon State University;
Laurel Cooper, Department of Botany & Plant Pathology, Oregon State University;
Justin L. Elser, Department of Botany & Plant Pathology, Oregon State University;
Austin Meier, Oregon State University;
Marie-Angélique Laporte, Bioversity International;
Christopher Mungall, Berkeley Bioinformatics Open-Source Projects;
Barry Smith, University at Buffalo;
Ethan KS. Johnson, Oregon State University;
Megan Seymour, Oregon State University;
Justin Preece, Department of Botany & Plant Pathology, Oregon State University;
Xu Xu, Oregon State University;
Ryan S. Kitchen, Oregon State University;
Botong Qu, Oregon State University;
Eugene Zhang, Oregon State University;
Elizabeth Arnaud, Bioversity International;
Seth Carbon, Lawrence Berkeley National Laboratory;
Sinisa Todorovic, Oregon State University;
Dennis Wm. Stevenson, New York Botanical Garden
Plant Omics Data Center: An Integrated Web Repository for Interspecies Gene Expression Networks with NLP-based Curation Shin Terashima, School of Agri., Meiji University;
Toru Kudo, School of Agri., Meiji University;
Tomoyuki Takano, School of Agri., Meiji University;
Maasa Kanno, School of Agri., Meiji University;
Misa Saito, School of Agriculture, Meiji University;
Noriko Matsuda, School of Agri., Meiji University;
Satomi Asano, School of Agri., Meiji University;
Yohei Sasaki, School of Agri., Meiji University;
Koji Yokoyama, School of Agri., Meiji University;
Hajime Ohyanagi, King Abdullah University of Science and Technology;
Kentaro Yano, School of Agri., Meiji University
Gene Family Construction and Analysis in Phytozome Jeremy L. Phillips, DOE Joint Genome Institute;
Joseph W. Carlson, DOE Joint Genome Institute;
Sajeev Batra, DOE Joint Genome Institute;
David M. Goodstein, DOE Joint Genome Institute;
Daniel S. Rokhsar, DOE Joint Genome Institute
MaizeGDB: New Tools and Resources John Portwood, USDA-ARS;
Ethalinda Cannon, Iowa State University;
Bremen M Braun, MaizeGDB;
Lisa Harper, USDA ARS;
Mary Schaeffer, USDA ARS and University of Missouri;
Jack Gardiner, Department of Genetics, Cellular, and Developmental Biology;
Michael Brumfield, Iowa State University;
Kyoung Tak Cho, Iowa State University;
Brittney Dunfee, Iowa State University;
David Schott, Iowa State University;
Taner Z. Sen, USDA -ARS /Iowa State University;
Carson M Andorf, USDA-ARS Corn Insects and Crop Genetics Research Unit, Iowa State University
TENOR: Database for Comprehensive mRNA-Seq Experiments in Rice Yoshihiro Kawahara, National Institute of Agrobiological Sciences;
Youko Oono, National Institute of Agrobiological Sciences;
Hironobu Wakimoto, National Institute of Agrobiological Sciences;
Jun Ogata, National Institute of Agrobiological Sciences;
Hiroyuki Kanamori, National Institute of Agrobiological Sciences;
Harumi Sasaki, National Institute of Agrobiological Sciences;
Satomi Mori, National Institute of Agrobiological Sciences;
Takashi Matsumoto, National Institute of Agrobiological Sciences;
Takeshi Itoh, National Institute of Agrobiological Sciences
Exploration of Genomic Selection Options for a Commercial Perennial Ryegrass Breeding Program Zibei Lin, Biosciences Research, DEDJTR;
Junping Wang, Hamilton Centre, Biosciences Research, DEDJTR;
Noel O. I. Cogan, Biosciences Research, DEDJTR;
John Forster, Biosciences Research, DEDJTR;
German Spangenberg, Biosciences Research, DEDJTR;
Ben Hayes, Biosciences Research, DEDJTR;
Hans D. Daetwyler, Biosciences Research, DEDJTR
TreeGenes: Enabling Visualization and Analysis in Forest Tree Genomics Emily Grau, University of Connecticut;
Steven A Demurjian Jr, University of Connecticut;
Hans Vasquez-Gross, University of California Davis;
Damian Gessler, Semantic Options;
David Neale, Dept. Plant Sciences University of California Davis;
Jill Wegrzyn, Department of Ecology and Evolutionary Biology, University of Connecticut
Hardwood Genomics Database (HGD): A Genomic and Genetic Web-Database for Hardwood Trees Research Ming Chen, University of Tennessee;
Nate Henry, University of Tennessee;
Thomas Lane, University of Tennessee, Knoxville;
Nathaniel Cannon, Penn State University;
Mark Coggeshall, University of Missouri;
Oliver Gailing, Michigan Technological University;
Haiying Liang, Clemson University;
Jeanne Romero-Severson, University of Notre Dame;
Scott Schlarbaum, University of Tennessee, Knoxville;
Ketia Shumaker, The University of West Alabama;
John E. Carlson, Penn State University;
Margaret Staton, University of Tennessee
FragariaCyc: A Metabolic Pathway Network for Diploid Strawberry F. vesca Sushma Naithani, Department of Botany & Plant Pathology, Oregon State University;
Christina Partipilo, Department of Botany & Plant Pathology, Oregon State University;
Rajani Raja, Department of Botany & Plant Pathology, Oregon State University;
Justin L. Elser, Department of Botany & Plant Pathology, Oregon State University;
Pankaj Jaiswal, Department of Botany & Plant Pathology, Oregon State University
LIS (Legume Information System): A Clade Based Web Resource for Legumes Sudhansu Dash, National Center for Genome Resources (NCGR);
Wei Huang, Iowa State University;
Jacqueline D. Campbell, Iowa State University;
Jugpreet Singh, ORISE Fellow, USDA-ARS-CICGRU;
Alex G. Rice, National Center for Genome Resources (NCGR);
Pooja E. Umale, National Center for Genome Resources (NCGR);
Alan Cleary, Montana State University;
Scott R. Kalberer, USDA-ARS-CICGRU;
Nathan T. Weeks, USDA-ARS-CICGRU;
Vijay Karingula, Iowa State University;
Prateek Gupta, Iowa State University;
Shivan Gunda, Iowa State University;
Ethalinda Cannon, Iowa State University;
Andrew D. Farmer, National Center for Genome Resources (NCGR);
Steven B. Cannon, USDA-ARS-CICGRU
Cool Season Food Legume Genome Database: An up-to-Date Resource Enabling Genetics, Genomics and Breeding Research in Pea, Lentil, Faba Bean and Chickpea Jodi L. Humann, Washington State University;
Sook Jung, Washington State University;
Ping Zheng, Washington State University;
Chun-Huai Cheng, Washington State University;
Taein Lee, Washington State University;
Morgan Frank, Washington State University;
Deah McGaughey, Washington State University;
Kristin Scott, Washington State University;
Jing Yu, Washington State University;
Stephen P. Ficklin, Washington State University;
Marwa N.M.E. Sanad, National Research Center- Egypt;
Heidi Hough, Washington State University;
Clare Coyne, USDA ARS;
Rebecca McGee, Washington State University;
Dorrie Main, Washington State University
The Vigna Genome Server, 'VigGS': A Genomic Knowledge Base of the Genus Vigna Hiroaki Sakai, National Institute of Agrobiological Sciences;
Ken Naito, National Institute of Agrobiological Sciences;
Yu Takahashi, National Institute of Agrobiological Sciences;
Takeshi Itoh, National Institute of Agrobiological Sciences;
Norihiko Tomooka, National Institute of Agrobiological Sciences
PeanutBase: A Resource for Peanut Researchers and Breeders Ethalinda Cannon, Iowa State University;
Wei Huang, Iowa State University;
Sudhansu Dash, National Center for Genome Resources (NCGR);
Jugpreet Singh, ORISE Fellow, USDA-ARS-CICGRU;
Scott R. Kalberer, USDA-ARS-CICGRU;
Longhui Ren, Iowa State University;
Pooja E. Umale, National Center for Genome Resources (NCGR);
Nathan Weeks, USDA-ARS-CICGRU;
Julie Dickerson, National Science Foundation;
Andrew D. Farmer, National Center for Genome Resources (NCGR);
Steven B. Cannon, USDA-ARS-CICGRU
The Federated Plant Database Initiative for the Legumes Steven B. Cannon, USDA-ARS-CICGRU;
Ethalinda Cannon, Iowa State University;
Jacqueline D. Campbell, Iowa State University;
Sudhansu Dash, National Center for Genome Resources;
Wei Huang, Iowa State University;
Akshay Yadav, Iowa State University;
Nathan T. Weeks, USDA-ARS-CICGRU;
Andrew Wilkey, Iowa State University;
Sam Hokin, National Center for Genome Resources;
David Grant, USDA-ARS-CICGR;
Rex Nelson, USDA-ARS-CICGRU;
Kevin H. Feeley, USDA-ARS-CICGRU;
Vivek Krishnakumar, J. Craig Venter Institute;
Jeremy D. DeBarry, University of Arizona;
Andrew D. Farmer, National Center for Genome Resources (NCGR);
David Fernandez-Baca, Iowa State University;
Christopher D. Town, J. Craig Venter Institute
BovineMine: A Data Mining Warehouse for the Bos taurus Genome Christine G. Elsik, Division of Animal Sciences, University of Missouri;
Colin M. Diesh, Division of Animal Sciences, University of Missouri;
Deepak R. Unni, Division of Animal Sciences, University of Missouri;
Aditi Tayal, Division of Animal Sciences, University of Missouri;
Hung N. Nguyen, MU Informatics Institute, University of Missouri;
Darren E. Hagen, Division of Animal Sciences, University of Missouri
EpiDB: An Omics Data Resource for Cattle James E. Koltes, Department of Animal Science, University of Arkansas;
Eric Fritz-Waters, Department of Animal Science, Iowa State University;
James M. Reecy, Iowa State University
The i5k Workspace@NAL - Updates and New Developments of an Arthropod Genome Portal Monica Poelchau, USDA/Agricultural Resarch Service/National Agricultural Library;
Christopher Childers, USDA/Agricultural Resarch Service/National Agricultural Library;
Vijaya Tsavatapalli, USDA/Agricultural Resarch Service/National Agricultural Library;
Gary Moore, USDA/Agricultural Resarch Service/National Agricultural Library;
Ursula Pieper, USDA/Agricultural Resarch Service/National Agricultural Library;
Mei-Ju May Chen, Genome and Systems Biology Degree Program, National Taiwan University and Academia Sinica;
Yu-Yu Lin, Graduate Institute of Biomedical Electronics and Bioinformatics, National Taiwan University
Crop Ontology: Integration of Standard Variables Léo Valette, Bioversity International;
Julian Pietragalla, Integrated Breeding Platform;
Marie-Angélique Laporte, Bioversity International;
Agbona Afolabi, International Institute of Tropical Agriculture (IITA);
Ousmane Boukar, International Institute of Tropical Agriculture;
Steven B. Cannon, USDA-ARS-CICGRU;
Brian W. Diers, University of Illinois;
Kate A. Dreher, Carnegie Institution for Science;
Pooran M Gaur, ICRISAT;
Alberto Fabio Guerrero, CIAT;
C Tom Hash, ICRISAT;
Vilma Hualla, International Potato Center (CIP);
Drabo Inoussa, INERA;
Scott R. Kalberer, USDA-ARS-CICGRU;
Clarisse Kondombo-Barro, INERA;
Shiv Kumar, ICARDA;
Antonio Lopez-Montes, International Institute of Tropical Agricultutre;
Naama Menda, Boyce Thompson Institute for Plant Research;
Randall Nelson, USDA-ARS;
Sam Ofodile, IITA;
Suyash Patil, ICRISAT;
Peteti Prasad, ICRISAT;
Karthika Rajendran, ICARDA;
Jean-Francois Rami, CIRAD;
Abhishek Rathore, ICRISAT;
N. Ruaraidh Sackville Hamilton, International Rice Research Institute;
Reinhard Simon, International Potato Center (CIP);
Niaba Teme, IER;
Eva Weltzien-Rattunde, ICRISAT;
Elizabeth Arnaud, Bioversity International;
Rosemary Shrestha, Genetic Resources Prog.,CIMMYT