33
Genome Mapping, Tagging & Characterization: Aquaculture

P0982
Comparative Genome Analysis of 52 Species Suggests Differential Associations of Repetitive Elements with Their Living Aquatic Environments
Zihao Yuan, Auburn University; The Fish Molecular Genetics and Biotechnology Laboratory; Shikai Liu, Auburn University; The Fish Molecular Genetics and Biotechnology Laboratory; Zhanjiang Liu, Auburn University; The Fish Molecular Genetics and Biotechnology Laboratory

P0983
Gene Editing:  an Opportunity for Sustainable Aquaculture
Anna Troedsson-Wargelius, Institute of Marine Research; Fernando Ayllon, Institute of Marine Research; Erik Kjærner-Semb, Institute of Marine Research; Lene Kleppe, Institute of Marine Research; Kai Ove Skaftnesmo, Institute of Marine Research; Tomasz Furmanek, Institute of Marine Research; Eva Andersson, Institute of Marine Research; Rolf B, Edvardsen, Institute of Marine Research

P0984
Seriola Genomics and the Knowledge Repository Serioladb.org
Andrew J. Severin, Iowa State University; Catherine Purcell, Southwest Fisheries Science Center, National Marine Fisheries Service; Margie Carter, Iowa State University; Rick Masonbrink, Iowa State University; Arun S. Seetharam, Iowa State University; John Hyde, Southwest Fisheries Science Center, National Marine Fisheries Service; Levi Baber, Iowa State University

P0985
Not Too Hot, Not Too Cold: Influences of Temperature Preference on Fish Growth
Sebastian Boltaña, Interdisciplinary Center for Aquaculture Research (INCAR), Department of Oceanography, University of Concepción; Nataly Sanhueza, Interdisciplinary Center for Aquaculture Research (INCAR), Department of Oceanography, University of Concepción; Andrea Aguilar, Interdisciplinary Center for Aquaculture Research (INCAR), Department of Oceanography, University of Concepción; Gabriel Arriagada, Interdisciplinary Center for Aquaculture Research (INCAR), Department of Oceanography, University of Concepción; Cristian Gallardo-Escárate, Interdisciplinary Center for Aquaculture Research (INCAR), Department of Oceanography, University of Concepción

P0986
Uncovering Variation in Zebrafish: mRNA Expression Profiles By Sex and Strain
Lindsay A. Holden, Portland State University; Kim H. Brown, Portland State University

P0987
Development of an Efficient Genome Editing Method in Salmonid Species
Sebastian Escobar, University of Chile; Cristian Bravo, FAVET-INBIOGEN.; Duxan Arancibia, Pontificia Universidad Catolica; Pedro Zamorano, Universidad de Antofagasta; Victor Martinez, FAVET-INBIOGEN-University of Chile

P0988
Identification of Differentially Expressed Atlantic Salmon Mirnas Responding to Salmonid Alphavirus Infection; Genome Analysis and Target Gene Predictions Suggest Many DE MiRNAs Participate in Negative Feedback Networks in the Innate Immune System
Nardos Tesfaye Woldemariam, Oslo and Akershus University college of applied sciences; Oleg Agafonov, Bioinformatics Core Facility, IFI, University of Oslo; Hilde Sindre, Norwegian Veterinary Institute; Bjørn Høyheim, Department of Basic Sciences and Aquatic Medicine, Faculty of Veterinary Medicine and Biosciences, Norwegian University of Life Sciences; Rune Andreassen, Oslo and Akershus University College of Applied Sciences

P0989
Chromosomal Relationship Between Member Species of Genus Salmo
Song Lin, SIMON FRASER UNIVERSITY

P0990
Development of a High-Density Genomic Platform for Coho Salmon
Victor Martinez, FAVET-INBIOGEN-University of Chile; Daniela Cichero, Aquagen, CHILE Blue Genomics.; Cristian Bravo, FAVET-INBIOGEN.; Thomas Moen, AquaGen

P0991
Transcriptional Response of Coho Salmon (Oncorhynchus kisutch) to the Intracellular Pathogen Piscirickettsia salmonis, Reveal Several Pathways Related with Disease Resistance
Cristian Bravo, FAVET-INBIOGEN.; Thomas Moen, AquaGen; Daniela Cichero, Aquagen, CHILE Blue Genomics.; Jacob S Torgersen, AQUAGEN, NORWAY; Victor Martinez, FAVET-INBIOGEN-University of Chile

P0992
Identification of Genomic Loci Associated with Maturation in Pacific Coho Salmon (Oncorhynchus kisutch)
Michelle T.T. Crown, Simon Fraser University, Molecular Biology and Biochemistry Department; Krzysztof P. Lubieniecki, Simon Fraser University, Molecular Biology and Biochemistry Department; Kristen A. Christensen, Simon Fraser University, Molecular Biology and Biochemistry Department; Ruth E. Withler, Fisheries and Oceans Canada, Pacific Biological Station; Janine Supernault, Fisheries and Oceans Canada, Pacific Biological Station; Robert H. Devlin, Fisheries and Oceans Canada, Centre for Aquaculture and Environmental Research; William S. Davidson, Simon Fraser University, Molecular Biology and Biochemistry Department

P0993
In the Shadow: The Emerging Role of Long Non-Coding RNAs in the Immune Response of Atlantic Salmon
Cristian Gallardo-Escárate, Interdisciplinary Center for Aquaculture Research (INCAR), Department of Oceanography, University of Concepción; Diego Valenzuela-Miranda, Laboratory of Biotechnology and Aquatic Genomics, Interdisciplinary Center for Aquaculture Research. University of Concepción, Chile.; Estefania Tarifeño, Laboratory of Biotechnology and Aquatic Genomics Interdisciplinary Center for Aquaculture Research (INCAR) University of Concepción, Concepción, Chile; Valentina Valenzuela-Muñoz, Laboratory of Biotechnology and Aquatic Genomics, Interdisciplinary Center for Aquaculture Research. University of Concepción, Chile.; Camille Détrée, Laboratory of Biotechnology and Aquatic Genomics, Interdisciplinary Center for Aquaculture Research. University of Concepción, Chile.; Gustavo Núñez-Acuña, Laboratory of Biotechnology and Aquatic Genomics, Interdisciplinary Center for Aquaculture Research. University of Concepción, Chile.; Sebastian Boltaña, University of Concepción, Chile.; Ana T. Gonçalves, Laboratory of Biotechnology and Aquatic Genomics, Interdisciplinary Center for Aquaculture Research. University of Concepción, Chile.; Steven Roberts, University of Washington

P0994
Novel Insights into the Response of Atlantic Salmon (Salmo salar) to Piscirickettsia salmonis: Interplay of Coding Genes and lncRNAs during Bacterial Infection
Diego Valenzuela-Miranda, Laboratory of Biotechnology and Aquatic Genomics, Interdisciplinary Center for Aquaculture Research. University of Concepción, Chile.; Cristian Gallardo, Laboratory of Biotechnology and Aquatic Genomics, Interdisciplinary Center for Aquaculture Research. University of Concepción, Chile.

P0995
Applying Transcriptomic Profiling to the Formulation of Sustainable Feeds for Atlantic Salmon (Salmo salar)
Albert Caballero-Solares, Department of Ocean Sciences, Memorial University of Newfoundland; Xi Xue, Department of Ocean Sciences, Memorial University of Newfoundland; Christopher C. Parrish, Department of Ocean Sciences, Memorial University of Newfoundland; Richard G. Taylor, Cargill Innovation Center; Matthew L. Rise, Department of Ocean Sciences, Memorial University of Newfoundland

P0996
Genotype Imputation to Improve the Efficiency of Genomic Selection in Atlantic Salmon
Ross D. Houston, The Roslin Institute and R(D)SVS, University of Edinburgh; Hsin-Yuan Tsai, The Roslin Institute and R(D)SVS, University of Edinburgh; Alastair Hamilton, Landcatch Natural Selection Ltd.; John Hickey, The Roslin Institute, University of Edinburgh; Oswald Matika, The Roslin Institute and R(D)SVS, University of Edinburgh

P0997
Geographical Distribution and Phylogenetic Conservation of the vgll3 Locus in Atlantic Salmon and other Fish Species
Erik Kjærner-Semb, Institute of Marine Research; Rolf B Edvardsen, Institute of Marine Research; Vidar Wennevik, Institute of Marine Research; Paloma Moran, Universidad de Vigo; Geir Dahle, Institute of Marine Research; Philip McGinnity, Institute of Marine Research; Anna Wargelius, Institute of Marine Research; Fernando Ayllon, Institute of Marine Research

P0998
Genotype Imputation in Atlantic Salmon: Impact on Refinement of GWAS and Assessment of Accuracy for Cost-Effective Genomic Selection
Grazyella M. Yoshida, Universidade Estadual Paulista "Júlio de Mesquita Filho"; Roberto Carvalheiro, Universidade Estadual Paulista "Júlio de Mesquita Filho"; Jean P. Lhorente, Aquainnovo; José M Yáñez, University of Chile

P0999
Identification of Differentially Expressed Atlantic Salmon miRNAs Responding to Salmonid Alphavirus infection; Genome Analysis and Target Gene Predictions Suggest Many DE miRNAs Participate in Negative Feedback Networks in the Innate Immune System
Nardos Tesfaye Woldemariam, Oslo and Akershus University college of applied sciences; Oleg Agafonov, Bioinformatics Core Facility, Oslo University Hospital; Hilde Sindre, Norwegian Veterinary Institute; Bjørn Høyheim, Norwegian University of Life Sciences, School of Veterinary Medicine, BasAm/Genetics; Rune Andreassen, Oslo and Akershus University College of Applied Sciences

P1000
Influence of Dietary LC-PUFA on Atlantic Salmon Growth and the Hepatic Transcriptome
Xi Xue, Department of Ocean Sciences, Memorial University of Newfoundland; Jennifer R. Hall, Department of Ocean Sciences, Memorial University of Newfoundland; Albert Caballero-Solares, Department of Ocean Sciences, Memorial University of Newfoundland; Richard G. Taylor, Cargill Innovation Center; Christopher C. Parrish, Department of Ocean Sciences, Memorial University of Newfoundland; Matthew L. Rise, Department of Ocean Sciences, Memorial University of Newfoundland

P1001
Using Pooled DNA of a Reference Population in Genomic Selection for a Disease Trait in Atlantic Salmon
Anna K Sonesson, Nofima AS; Haavard Bakke, SalmoBreed AS; Giorgio Malacrida, BMR Genomics; Luqman Aslam, Nofima As; Matthew Baranski, Nofima

P1002
Gut Microbiota Diversity of Oncorhynchus mykiss Across the Cascade Divide
Christina C. Yildirimer, Portland State University; Kim H. Brown, Portland State University

P1003
Functional Diets Modulate lncRNA-Coding Genes Interactions in the Intestine of Rainbow Trout Oncorhynchus mykiss
Gustavo Núñez-Acuña, Laboratory of Biotechnology and Aquatic Genomics, Interdisciplinary Center for Aquaculture Research. University of Concepción, Chile.; Camille Détrée, Laboratory of Biotechnology and Aquatic Genomics, Interdisciplinary Center for Aquaculture Research. University of Concepción, Chile.; Ana T. Gonçalves, Laboratory of Biotechnology and Aquatic Genomics, Interdisciplinary Center for Aquaculture Research. University of Concepción, Chile.; Cristian Gallardo-Escárate, Interdisciplinary Center for Aquaculture Research (INCAR), Department of Oceanography, University of Concepción

P1004
Sequencing and Functional Annotation of the Transcriptome of Oncorhynchus kisutch
Daniela Reyes, Universidad de Santiago de Chile; Eduardo Zavala, Universidad de Santiago de Chile; Javier Moya, Fish Vet Group Spa; Andrés Astreuly, Marine Farm S.A; Rodrigo Vidal, Universidad de Santiago de Chile

P1005
Transcriptome Response to Hormonal Manipulation of Follicle-Enclosed Oocytes in Rainbow Trout
Hao Ma, USDA-ARS-NCCCWA; Guangtu Gao, USDA-ARS-NCCCWA; Gregory M. Weber, USDA-ARS-NCCCWA

P1006
MicroRNAs Associated with Muscle Growth and Fillet Quality in Rainbow Trout
Bam D Paneru, Middle Tennessee State University; Rafet Al-Tobasei, Middle Tennessee State University; Timothy D. Leeds, USDA-ARS-NCCCWA; Brett Kenney, West Virginia University; Mohamed Salem, Middle Tennessee State University

P1007
A New Single-Nucleotide Polymorphisms Database for Rainbow Trout Generated Through Whole Genome Resequencing of Selected Samples
Guangtu Gao, USDA-ARS-NCCCWA; Sigbjørn Lien, Centre of Integrative Genetics (CIGENE), Department of Animal and Aquacultural Sciences, Norwegian University of Life Sciences; Torfinn Nome, Centre of Integrative Genetics (CIGENE), Department of Animal and Aquacultural Sciences, Norwegian University of Life Sciences; Thomas Moen, AquaGen; Devon E. Pearse, Fisheries Ecology Division, Southwest Fisheries Science Center, National Marine Fisheries Service; Gary H. Thorgaard, School of Biological Sciences and Center for Reproductive Biology, Washington State University; Yniv Palti, USDA-ARS-NCCCWA

P1008
Antisense Long Non-Coding RNAs in Rainbow Trout: Discovery and Potential Role in Muscle Growth and Quality Traits
Ali R. Ali, Middle Tennessee State University; Rafet Al-Tobasei, Middle Tennessee State University; Timothy D. Leeds, USDA-ARS-NCCCWA; Brett Kenney, West Virginia University; Mohamed Salem, Middle Tennessee State University

P1009
Identification of Commercial Rainbow Trout Strains Using a SNP Panel
Sixin Liu, USDA-ARS-NCCCWA; Yniv Palti, USDA-ARS-NCCCWA; Kyle E. Martin, Troutlodge, Inc.; James E. Parsons, Troutlodge, Inc.; Caird E. Rexroad, III, USDA-ARS-NCCCWA

P1010
Identification of SNPs with Allelic Imbalances in Rainbow Trout Genetic Lines Showing Different Susceptibility to Infection with Flavobacterium psychrophilum
Rafet Al-Tobasei, Middle Tennessee State University; Yniv Palti, USDA-ARS-NCCCWA; Gregory D. Wiens, USDA-ARS-NCCCWA; Mohamed Salem, Middle Tennessee State University

P1011
Genome-Wide Association Analysis of Bacterial Cold Water Disease Resistance in Rainbow Trout Reveals the Potential for a Combined Approach between Genomic Selection and Marker Assisted Selection
Yniv Palti, USDA-ARS-NCCCWA; Roger L. Vallejo, USDA-ARS-NCCCWA; Kyle E. Martin, Troutlodge, Inc.; Jason P. Evenhuis, USDA-ARS-NCCCWA; Guangtu Gao, USDA-ARS-NCCCWA; Sixin Liu, USDA-ARS-NCCCWA; Gregory D. Wiens, USDA-ARS-NCCCWA; Timothy D. Leeds, USDA-ARS-NCCCWA; James E. Parsons, Troutlodge, Inc.

P1012
Third Generation Sequencing: Unraveling the Genome and the Immunoglobulin Superfamily Genes in Catfish (Ictalurus punctatus)
Sylvie M.A. Quiniou, USDA-ARS; Eva Bengten, University of Mississippi Medical Center; Christophe Klopp, INRA; Bryan M. Musungu, USDA-ARS; Mekki Boussaha, INRA UMR1313 Animal Genetics and Integrative Biology

P1013
The Intestinal Immune Responses of Channel Catfish Against Live Attenuated Edwardsiella ictaluri Vaccines
Nawar Al-Janabi, Mississippi State University; Hossam Abdelhamed, Mississippi State University; Jingjun Lu, Mississippi State University; Iman Ibrahim, Mississippi State University; Wes Baumgartner, Mississippi State University; Lesya Pinchuk, Mississippi State University; Mark Lawrence, Mississippi State University; Attila Karsi, Mississippi State University

P1014
A Genome-Wide Association Study Reveals A Region Associated With Body Weight In Catfish
Ning Li, Auburn University; The Fish Molecular Genetics and Biotechnology Laboratory; Tao Zhou, Auburn University; The Fish Molecular Genetics and Biotechnology Laboratory; Xin Geng, Auburn University; The Fish Molecular Genetics and Biotechnology Laboratory; Yulin Jin, Auburn University; Xiaozhu Wang, Auburn University; The Fish Molecular Genetics and Biotechnology Laboratory; Shikai Liu, Auburn University; The Fish Molecular Genetics and Biotechnology Laboratory; Zhanjiang Liu, Auburn University; The Fish Molecular Genetics and Biotechnology Laboratory

P1015
A Genome-Wide Association Study of Heat Stress-Associated SNPs in Catfish
Yulin Jin, Auburn University; Tao Zhou, Auburn University; The Fish Molecular Genetics and Biotechnology Laboratory; Xin Geng, Auburn University; Shikai Liu, Auburn University; Ailu Chen, Auburn University; Jun Yao, Auburn University; Chen Jiang, Auburn University; Suxu Tan, Auburn University; The Fish Molecular Genetics and Biotechnology Laboratory; Baofeng Su, Auburn University; Zhanjiang Liu, Auburn University; The Fish Molecular Genetics and Biotechnology Laboratory

P1016
Genome Biology of Maraena Whitefish (Coregonus maraena) for Preservation of Baltic Fish Biodiversity
Tom Goldammer, Leibniz Institute for Farm Animal Biology (FBN); Ronald M. Brunner, Leibniz Institute for Farm Animal Biology (FBN); Alexander Rebl, Leibniz Institute for Farm Animal Biology (FBN); Frieder Hadelich, Leibniz Institute for Farm Animal Biology (FBN); Andreas Brietzke, Leibniz Institute for Farm Animal Biology (FBN); Andreas Borchel, SLRC-Sea Lice Research Centre, Department of Biology, University of Bergen; Simone Altmann, Leibniz Institute for Farm Animal Biology (FBN); Mareen Nipkow, Leibniz Institute for Farm Animal Biology (FBN)

P1017
High Throughput SNP Genotyping of White Sturgeon: A Polyploid Species in Conservation and Aquaculture
Nathan Campbell, Columbia River Inter-Tribal Fish Commission; Shawn Narum, Columbia River Inter-Tribal Fish Commission; Andrew P. Matala, Columbia River Inter-Tribal Fish Commission

P1018
Cloning the Candidate Genes for Benedenia Disease Resistance in Japanese Yellowtail (Seriola quinqueradiata)
Yusuke Takeuchi, Tokyo University of Marine Science and Technology; Masatoshi Nakamoto, Tokyo University of Marine Science and Technology; Akiyuki Ozaki, National Research Institute of Aquaculture - National Research Development Agency; Kazunori Yoshida, Seikai National Fisheries Research Institute - National Research Development Agency; Kazuo Araki, National Research Institute of Aquaculture - National Research Development Agency; Takashi Sakamoto, Tokyo University of Marine Science and Technology

P1019
A High Quality Assembly of the Nile Tilapia (Oreochromis niloticus) Genome Provides Insights into the Structure of Two Sex Determination Regions
Matthew A. Conte, University of Maryland; William J Gammerdinger, University of Maryland; David J. Penman, Institute of Aquaculture, University of Stirling; Thomas Kocher, University of Maryland

P1020
Development and Application of a High Density SNP Array for Oysters
Alejandro P. Gutierrez, The Roslin Institute and R(D)SVS, University of Edinburgh; Frances Turner, Edinburgh Genomics, University of Edinburgh; Tim P. Bean, CEFAS; Karim Gharbi, Edinburgh Genomics, University of Edinburgh; Ross D. Houston, The Roslin Institute and R(D)SVS, University of Edinburgh

P1021
Determination of Genetic Sex in Seriola ialandi ialandi Using Whole Genome Sequencing
Victor Martinez, FAVET-INBIOGEN-University of Chile; Phillip Dettleff, FAVET-INBIOGEN-University of Chile; Sebastian Escobar, University of Chile; Pedro Zamorano, Universidad de Antofagasta

P1022
Progress on the Genome Characterisation of the Sydney Rock Oyster Saccostrea glomerata
Daniel Powell, University of the Sunshine Coast; Wayne O'Connor, NSW Department of Industry, Department of Primary Industries; David Raftos, Macquarie University; Abigail Elizur, University of the Sunshine Coast

P1023
A Genomic Toolbox (Genome, Transcriptome and GBS) for the New Zealand Greenshell™ Mussel (Perna canaliculus)
Rachael Ashby, University of Otago, Department of Anatomy; Hayley Baird, AgResearch Ltd, Invermay Agricultural Centre; Rudiger Brauning, AgResearch, Invermay Agricultural Centre; Rayna Anderson, AgResearch Ltd, Invermay Agricultural Centre; Tracey Van Stijn, AgResearch Ltd, Invermay Agricultural Centre; Kim Rutherford, University of Otago, Department of Anatomy; Chris Brown, University of Otago, Department of Biochemistry; Neil Gemmell, University of Otago, Department of Anatomy; Shannon Clarke, AgResearch, Invermay Agricultural Centre

P1024
Development of a Genotyping-in-Thousand by Sequencing (GT-seq) Panel for Chilean Blue Mussel with Applications in Traceability
Cristian Araneda, Universidad de Chile, Depto. de Produccion Animal; M. Angelica Larrain, Universidad de Chile, Departamento de Ciencia de los Alimentos y Tecnología Química; Nathan Campbell, Columbia River Inter-Tribal Fish Commission; Felipe Jilberto, Universidad de Chile, Depto. de Produccion Animal; Qingchao Wang, Huazhong Agricultural University, College of Fisheries; Shawn Narum, Columbia River Inter-Tribal Fish Commission

P1025
Development of a Genomic Toolkit for Haliotis species
Arun S. Seetharam, Iowa State University; Catherine Purcell, Southwest Fisheries Science Center, National Marine Fisheries Service; Rick Masonbrink, Iowa State University; Andrew J. Severin, Iowa State University; John Hyde, Southwest Fisheries Science Center, National Marine Fisheries Service

P1191
Integrated Research on Parasitic Disease in Wild Salmonid Fish: Linking Genomes, Physiology and Ecology
Anti Vasemägi, Turun Yliopisto Biologian laitos Genetiikka; Paul V Debes, University of Turku; Freed Ahmad, University of Turku; Matthieu Bruneaux, University of Jyväskylä; Riho Gross, Estonian University of Life Sciences; Petteri Ilmonen, University of Turku

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