6
Marker Systems Diversity: SNP

P0089
Collectively Improving Robustness and Reproducibility in Genotyping-By-Sequencing (GBS) Experiments
Marcus Davy, The New Zealand Institute for Plant & Food Research Limited; Cecilia H. Deng, The New Zealand Institute for Plant & Food Research Limited; Helge Dzierzon, The New Zealand Institute for Plant & Food Research LImited; Robert J Elshire, The Elshire Group LImited; Stephanie Galla, University of Canterbury; Robyn Johnston, The Elshire Group LImited; Tammy Steeves, University of Canterbury; Roy Storey, The New Zealand Institute for Plant & Food Research Limited

P0090
Genome Coverage vs Sequencing Depth: How Sequencing Parameters Affect Detection of Population Structure
Carly F Graham, University of Regina; Douglas Boreham, North Ontario School of Medicine; Joanna Wilson, McMaster University; Richard Manzon, University of Regina; Christopher Somers, University of Regina

P0091
Evaluation of SNP Genotyping Errors Using Quality-Assurance Sample Checks with Implications on Genomic Prediction
Jiaqi Xu, Neogen/GeneSeek; Jiansheng Qiu, Neogen/GeneSeek; Xiao-Lin Wu, Neogen/GeneSeek; Ryan Ferretti, Neogen/GeneSeek; Qianjun Xiao, Neogen/GeneSeek; Stephen D. Kachman, University of Nebraska - Lincoln; Stewart Bauck, Neogen/GeneSeek

P0092
Heterotic Grouping of ARC Maize (Zea mays L.) Inbred Lines Based on Yield-Specific Combining Ability Data and SNP Markers
Siphiwokuhle F. Shandu, Agricultural Research Council-GCI; Kingstone Mashingaidze, Agricultural Research Council-Grain Crops Institute; Lebogang Angelo Madubanya, Agricultural Research Council

P0093
Molecular Characterization of IITA Maize Inbred Lines Resistant to Striga hermonthica using SNP Markers
Wende Abera Mengesha, International Institute of Tropical Agricultural (IITA); Abebe Menkir, International Institute of Tropical Agriculture (IITA); Melaku Gedil, International Institute of Tropical Agriculture; Silvestro Meseka, International Institute of Tropical Agriculture; Nnanna Unachukwu, International Institute of Tropical Agriculture; Adetutu Farinola, International Institute of Tropical Agriculture; Gezahegn Girma, International Institute of Tropical Agriculture

P0094
Analysis of Single Nucleotide Polymorphisms Based on RNA Sequencing Data of Diverse Bio-Geographical Accessions in Barley
K. Takahagi, Kihara Institute for Biological Research, Yokohama City University; Y. Uehara-Yamaguchi, RIKEN CSRS; T. Yoshida, RIKEN CSRS; T. Sakurai, Faculty of Agriculture and Marine Science, Kochi University; K. Shinozaki, RIKEN CSRS; K. Mochida, Kihara Institute for Biological Research, Yokohama City University; D. Saisho, Okayama University

P0095
SNP Calling and Validation from Transcriptome Sequences in Tall Fescue Aiming to Map QTL for Summer Dormancy
Shyamal K Talukder, The Samuel Roberts Noble Foundation; Nick Krom, The Samuel Roberts Noble Foundation; Liang Sun, The Samuel Roberts Noble Foundation; Jennifer Black, The Samuel Roberts Noble Foundation; Konstantin Chekhovskiy, The Samuel Roberts Noble Foundation; Yuhong Tang, The Samuel Roberts Noble Foundation; Junil Chang, Noble Research Institute, LLC; Malay C. Saha, Noble Research Institute

P0096
Genomic-Specific Single Nucleotide Polymorphism (SNP) Markers for Monitoring Introgression from Tall-Wheatgrass, Lophorpyrum elongatum, into Wheat
Jiale Xu, University of California in Davis; Jan Dvorak, Department of Plant Sciences, University of California

P0097
Genomic Variation the Threatened Palm Euterpe edulis (Martius) Along Altitudinal Gradients of the Atlantic Forest
Mariana Novello, University of Campinas

P0098
­Gene Flow with Wild Relatives Reshape Diversity and Suggest Adaptative Introgression in Cultivated Pearl Millet
Concetta Burgarella, Univ-montpellier 2; Philippe Cubry, IRD; Olivier Francois, Grenoble INP TIMC-IMAG, Faculty of Medicine; Ndjido A Kane, ISRA Senegal; Yves P. Vigouroux, IRD; Cécile Berthouly-Salazar, IRD

P0099
Evaluation of Genetic Effects on Competition to Improve Genomic Prediction in Cassava Field Experiments
Ani A. Elias, Cornell University; Jean-Luc Jannink, USDA-ARS

P0100
Cassava SNPY-Array a Power Tool to Evaluate Diversity, Variety Identification, Redundancy and Population Structure
Tatiana Ovalle, CIAT

P0101
African Yam Domestication: Analyses of Selection Pinpoint to Starch, Root and Photosynthesis Related Genes
Roland Akakpo, IRD; Nora Scarcelli, IRD; Hana Chaïr, CIRAD; Alexandre Dansi, University of Abomey - Faculty of Science of Dassa; Gustave Djedatin, University of Abomey - Faculty of Science of Dassa; Karine Alix, AgroParisTech; Anne Celine Thuillet, IRD; Yves P. Vigouroux, IRD

P0102
Genotyping Bromus tectorum using SNP Markers from a Partially Sequenced Transcriptome to Detect Cryptic Invasion in Western North America
Craig E. Coleman, Brigham Young University; Susan E. Meyer, USDA Shrub Sciences Laboratory; Keith R. Merrill, Brigham Young University; Elizabeth A. Leger, University of Nevada - Reno; Desiree R. Eldon, Brigham Young University

P0103
Comparative Transcriptomics Uncovers Alternative Splicing Events and Marker Discovery in Radish (Raphanus sativus L.)
Xiaobo Luo, National Key Laboratory of Crop Genetics and Germplasm Enhancement, College of Horticulture, Nanjing Agricultural University; Liang Xu, National Key Laboratory of Crop Genetics and Germplasm Enhancement, College of Horticulture, Nanjing Agricultural University; Yan Wang, National Key Laboratory of Crop Genetics and Germplasm Enhancement, College of Horticulture, Nanjing Agricultural University; Wei Zhang, National Key Laboratory of Crop Genetics and Germplasm Enhancement, College of Horticulture, Nanjing Agricultural University; Ronghua Wang, National Key Laboratory of Crop Genetics and Germplasm Enhancement, College of Horticulture, Nanjing Agricultural University; Liwang Liu, National Key Laboratory of Crop Genetics and Germplasm Enhancement, College of Horticulture, Nanjing Agricultural University

P0104
Identification and Evaluation of Transcriptome-Derived A and B-Genome Single Nucleotide Polymorphism (SNP) Markers in Peanut (Arachis hypogaea L.)
Theophilus Kwabla Tengey, Department of Plant and Soil Science, Texas Tech University; Ratan Chopra, USDA-ARS; Charles E. Simpson, Texas A&M AgriLife Research; Andrew Hillhouse, Department of Veterinary Pathobiology, Texas A&M University College of Veterinary Medicine; Venugopal Mendu, Fiber and Biopolymer Research Institute (FBRI), Department of Plant and Soil Science, Texas Tech University; Mark D. Burow, Texas A&M AgriLife Research, Lubbock, and Department of Plant and Soil Science, Texas Tech University

P0105
Identification By the DArTseq Method of the Genetic Origin of the Coffea canephora Cultivated in Vietnam and Mexico
Andrea Garavito, Center for Bioinformatics and Computational Biology; Christophe Montagnon, RD2 Vision; Romain Guyot, Institut de Recherche pour le Developpement; Benoit Bertrand, CIRAD UMR IPME

P0106
Development and Evaluation of a 8K SNP Genotyping Array for Coffea canephora and Coffea arabica
Virginie Merot-l'Anthoene, Nestle R&D Center; Darracq Olivier, Nestle R&D Center; Vimel Rattina, Nestle R&D Center; Michel Rigoreau, Centre R&D Nestlé Tours; Maud Lepelley, Centre R&D Nestlé Tours; Rémi Tournebize, IRD; Christine Tranchant-Dubreuil, IRD - UMR DIADE; Sylviane Metairon, NIHS; Coralie Fournier, NIHS; Pascal Musoli, NaCoRi; Ucu Sumirat, ICCRI; Hyacinthe Legnate, IRD; Alexandre de Kochko, IRD UMR DIADE; Patrick Descombes, NIHS; Dominique Crouzillat, Centre R&D Nestlé Tours; Valerie Poncet, IRD UMR DIADE

P0107
Identification of Haplotypes in Octoploid Strawberry (Fragaria × ananassa) Cultivars using 90K IStraw
Amparo Monfort, IRTA, Centre for Research in Agricultural Genomics CSIC-IRTA-UAB-UB; Miriam Paya, IRTA, Centre for Research in Agricultural Genomics CSIC-IRTA-UAB-UB; Kostas Alexiou, IRTA, Centre for Research in Agricultural Genomics CSIC-IRTA-UAB-UB; Jose M Hidalgo, IRTA, Centre for Research in Agricultural Genomics CSIC-IRTA-UAB-UB

P0108
Loss of Heterozygosity Analysis in Citrus Using a High Density SNP Array
Tulsi Dey, University of California Riverside; Mikeal L. Roose, University of California Riverside

P0110
MAS: A Pretentious Technology for Selection of Superior Dairy Animals
Maryam Javed, UVAS; Dr. Asif Nadeem, University of veterinary and animal sciences

P0111
Triallelic SNPs for Estimating Cattle Introgression, Inbreeding, and Determining Parentage in North American Yak
Theodore S. Kalbfleisch, University of Louisville; Jessica L. Petersen, University of Nebraska; Peter Hackett, Institute for Altitude Medicine; Veronica Basnayake, GeneSeek, Inc.; Jiansheng Qiu, Neogen/GeneSeek; E. Barry Simpson, GeneSeek, Inc.; Michael P. Heaton, USDA, ARS, U.S. Meat Animal Research Center (USMARC)

P0112
Phenome of Acaricide Resistance in the Southern Cattle Fever Tick, Rhipicephalus microplus: Molecular Marker Development
Guilherme M. Klafke, USDA - ARS - CFTRL; Jason P. Tidwell, USDA-ARS Cattle Fever Tick Research Laboratory; Daniela Sanchez, University of Texas Rio Grande Valley; Robert J. Miller, USDA-ARS-Cattle Fever Tick Research Laboratory; Adalberto A. Pérez de León, USDA-ARS Knipling-Bushland U.S. Livestock Insects Research Laboratory and Veterinary Pest Genomics Center

P0113
Functional and Structural Impact of Non- Synonymous SNPs in theMYH1 Gene in Korean Jeju Native Pigs
Sung-Jin Lee, Kangwon National University; Kyeong-Rok Kwak, Kangwon national university

P0114
Association Between the SNPs within TCR-Beta Gene Related Coccidiosis Resistance and Growth Performance in Chickens
So-Young Choi, Kangwon National University; Sung-Jin Lee, Kangwon national university; Min-Wook Hong, Kangwon National University; Song-Yi Yang, Kangwon national university; Yeong Ho Hong, Chung-Ang University

P0115
Applying SNP Array Technology to Assess Genetic Diversity in Russian Gene Pool of Chickens
Michael N. Romanov, University of Kent; Natalia V. Dementyeva, Russian Research Institute of Farm Animal Genetics and Breeding; Kirill V. Plemyashov, Russian Research Institute of Farm Animal Genetics and Breeding; Valeriy P. Terletsky, Russian Research Institute of Farm Animal Genetics and Breeding; Olga I. Stanishevskaya, Russian Research Institute of Farm Animal Genetics and Breeding; Andrei A. Kudinov, Russian Research Institute of Farm Animal Genetics and Breeding; Elena S. Fedorova, Russian Research Institute of Farm Animal Genetics and Breeding; Oksana Yu. Perinek, Russian Research Institute of Farm Animal Genetics and Breeding; Tatyana A. Larkina, Russian Research Institute of Farm Animal Genetics and Breeding; Nikolai V. Pleshanov, Russian Research Institute of Farm Animal Genetics and Breeding

P0116
Using GWAS and Next Gen Genotype-by-Sequencing to Map Determinants of Pulmonary Hypertension (ascites) in Broilers
Shatovisha Dey, University of Arkansas, Cell and Molecular Biology Program; Katy Tarrant, California State University, Fresno; Alia Parveen, University of Arkansas, Cell and Molecular Biology Program; Nicholas B. Anthony, University of Arkansas, Department of Poultry Sciences; Douglas D. Rhoads, University of Arkansas, Cell and Molecular Biology Program

P1240
Insights on the Origin of Cultivated Potatoes
Flor Rodriguez, International Potato Center (CIP); Jorge Núñez, International Potato Center (CIP); Alexander Vowinkel, Freie Universtität Berlin; Walter Sanseverino, Sequentia Biotech; Reinhard Simon, International Potato Center (CIP); David Spooner, USDA - ARS; Merideth Bonierbale, International Potato Center (CIP)

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