Computer Demo 2

Date: Monday, January 16, 2017
Time: 12:50 PM-3:00 PM
Room: California
Organizers:
Monica C. Munoz-Torres and Brian Smith-White
12:50 PM
C09
GOBII: Genomic Open-source Breeding Informatics Initiative
Philip Glaser, Cornell Institute of Biotechnology; Yanxin Gao, Cornell University; Elizabeth Jones, GOBII Project, Biotechnology Dept, Cornell University; Yaw A. Nti-Addae, Cornell University; Kevin Palis, Boyce Thompson Institute; Syed Raza, Cornell University; Joshua Lamos-Sweeney, Cornell University; Angel Villahoz-Baleta, Cornell University; Kelly Robbins, Cornell University; Jean-Luc Jannink, USDA-ARS; Lukas Mueller, Boyce Thompson Institute; Mark E Sorrells, Cornell University; Qi Sun, Institute for Genomic Diversity, Cornell University; Edward S. Buckler, USDA-ARS-Cornell University; Susan McCouch, Cornell University

1:05 PM
C10
Gigwa - Genotype Investigator for Genome-Wide Analyses.
Manuel Ruiz, CIRAD, UMR AGAP / CIAT; Guilhem Sempéré, CIRAD, UMR Intertryp; Adrien Petel, CIRAD; Alexis Dereeper, IRD, UMR RPB; Gautier Sarah, INRA - UMR AGAP; Pierre Larmande, IRD, UMR DIADE, Institut de Biologie Computationnelle

1:20 PM
C11
The Brassica Information Portal: Towards Integrating Phenotype and Genotype Data.
Annemarie Eckes, Earlham Institute; Tomasz Gubala, Earlham Institute; Piotr Nowakowski, Earlham Institute; Tomasz Szymczyszyn, Earlham Institute; Wiktor Jurkowski, Earlham Institute

1:35 PM
C12
GnpIS-Ephesis, Plant Phenotype Field Experimentations Resources – Data Discovery and Dataset Building Use Cases.
Cyril Pommier, INRA - URGI; Guillaume Cornut, INRA - URGI; Michael Alaux, INRA - URGI; Thomas Letellier, URGI, INRA, Université Paris-Saclay; Célia Michotey, URGI, INRA, Université Paris-Saclay; Erik Kimmel, INRA - URGI; Sophie Durand, INRA - URGI; Raphael Flores, INRA - URGI; Florian Philippe, INRA - URGI; Mathide Lainé, INRA - URGI; Eric Duchene, INRA-SVQV; Thierry Lacombe, INRA - Domaine de Vassal; Francois-Xavier Oury, INRA Site de Crouël; Gilles Charmet, INRA UMR GDEC Clermont-Fd, France; Arnaud Gauffreteau, French National Institute of Agronomy (INRA) Agronomy; Hadi Quesneville, INRA - URGI; Anne-Francoise Adam-Blondon, INRA - URGI

1:50 PM
C13
Knowledge.Bio: A Web Application for Collaboratively Building and Exploring Networks of Biological Relationships.
Richard Michael Bruskiewich, STAR Informatics / Delphinai Corporation; Kenneth Casimir Huellas-Bruskiewicz, Simon Fraser University; Chandan Kumar Mishra, Simon Fraser University; Farzin Ahmed, Simon Fraser University; Yinglun Colin Qiao, Simon Fraser University; Jarielle D Lim, Simon Fraser University; Lance Hannestad, Simon Fraser University; Rudy Kong Tin Lun, Simon Fraser University; Benjamin M Good, The Scripps Research Institute

2:05 PM
C14
The Triticeae Toolbox (T3): Connecting Phenotypes, Genotypes, and Biological Knowledge
Clay Birkett, USDA-ARS; Clare Saied, Cornell University, Dept. of Plant Breeding and Genetics; David Matthews, Cornell University; David Hane, USDA-ARS-WRRC; Jean-Luc Jannink, USDA-ARS / Cornell University

2:20 PM
C15
e!Dal - a Open Source Software to Store, Share and Publish Research Data
Matthias Lange, Leibniz Institute of Plant Genetics and Crop Plant Research (IPK) Gatersleben; Daniel Arend, Leibniz Institute of Plant Genetics and Crop Plant Research (IPK) Gatersleben; Uwe Scholz, Leibniz Institute of Plant Genetics and Crop Plant Research (IPK) Gatersleben

2:35 PM
C16
User-Friendly Whole Genome DNA Methylation Analysis With FlowGe
Jeffrey Grover, University of Arizona; Matthew Bomhoff, University of Arizona; Sean Davey, University of Arizona; Brian D. Gregory, University of Pennsylvania; Rebecca A. Mosher, University of Arizona; Eric Lyons, University of Arizona

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