Computer Demo 4

Date: Wednesday, January 18, 2017
Time: 10:30 AM-12:40 PM
Room: California
Organizers:
Monica C. Munoz-Torres and Brian Smith-White
10:30 AM
C23
COPO: A Data Stewardship Platform for Plant Scientists
Felix Shaw, Earlham Institute; Anthony Etuk, Earlham Institute; Alejandra Gonzalez-Beltran, Oxford e-Research Centre, University of Oxford; David Johnson, Oxford e-Research Centre, University of Oxford; Philippe Rocca-Serra, Oxford e-Research Centre, University of Oxford; Paul J. Kersey, EMBL - The European Bioinformatics Institute; Ruth Bastow, Global Plant Council; University of York; Katherine Denby, University of York; Susanna A. Sansone, Oxford e-Research Centre, University of Oxford; Robert P. Davey, Earlham Institute

10:45 AM
C24
Systems Biology Resources for the Citrusgreening Disease Complex.
Prashant S Hosmani, Boyce Thompson Institute; Surya Saha, Boyce Thompson Institute; Mirella Flores-Gonzalez, Boyce Thompson Institute; Susan Brown, Kansas State University, KSU Bioinformatics Center; Lukas Mueller, Boyce Thompson Institute

11:00 AM
C25
SNP-Seek Resource for Rice Research
Locedie Mansueto, International Rice Research Institute; Roven Rommel Fuentes, International Rice Research Institute; Nikki Borja, International Rice Research Institute; Jeffrey Detras, International Rice Research Institute; Juan Miguel Abriol-Santos, International Rice Research Institute; Dmytro Chebotarov, International Rice Research Institute; Millicent D. Sanciangco, International Rice Research Institute; N. Ruaraidh Sackville Hamilton, International Rice Research Institute; Ramil P. Mauleon, International Rice Research Institute; Kenneth L. McNally, International Rice Research Institute; Nickolai Alexandrov, International Rice Research Institute

11:15 AM
C26
Elasticsearch Indexing/Search and Expression Data Visualization with Two New Tripal Extension Modules
Ming Chen, University of Tennessee; Nate Henry, University of Tennessee; Thomas Lane, University of Tennessee; Xiao Zhou, University of Tennessee; Jill L. Wegrzyn, Department of Ecology and Evolutionary Biology - University of Connecticut; Stephen P. Ficklin, Washington State University; Margaret Staton, University of Tennessee

11:30 AM
C27
Toggle-3 : A Framework to Build Quickly Pipelines and to Perform Large-Scale NGS Analysis
Christine Tranchant-Dubreuil, IRD - UMR DIADE; Sebastien Ravel, CIRAD; Cécile Monat, IRD - UMR DIADE; Laura Helou, IRD - UMR DIADE; Abdoulaye Diallo, IRD - UMR DIADE; Gautier Sarah, INRA - UMR AGAP; Julie Orjuela-Bouniol, ADNid company; François Sabot, IRD - UMR DIADE

PDF file
11:45 AM
C28
Bgee: Database and R Package for Retrieving the Preferred Anatomical Expression Localization of a List of Genes, or of a Single Gene, in Animals.
Frederic B. Bastian, SIB Swiss Institute of Bioinformatics - University of Lausanne

12:00 PM
C29
Using the Wheat Tilling Resource to Find Mutations of Interest
Hans Vasquez-Gross, University of California Davis; Ksenia V Krasileva, The Genome Analysis Centre, The Sainsbury Laboratory; Tyson R. Howell, University of California Davis; Paul C. Bailey, The Genome Analysis Centre; Francine Paraiso, University of California Davis; James Simmonds, John Innes Center; Ricardo H. Ramirez-Gonzalez, The Genome Analysis Centre; Xiaodong Wang, University of California Davis; Christine Fosker, The Genome Analysis Centre; Sarah Ayling, The Genome Analysis Centre; Andy L Phillips, Rothamsted Research; Cristobal Uauy, John Innes Centre; Jorge Dubcovsky, University of California, Davis

12:15 PM
C30
Using the Public Plant Breeding API (BrAPI) to Access Data from the Statistical Platform R
Reinhard Simon, International Potato Center (CIP); Nicolas Morales, Boyce Thompson Institute; Maikel Verouden, Biometris, Wageningen Plant Research; Lukas Mueller, Boyce Thompson Institute

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