2209
SGN Workshop - Solanaceae Genomes, Tools, and the Breeder’s Toolbox

SGN is a repository for whole genome sequences, large scale genotype, genetic map, expression, and phenotype data. It provides access to data using in-house and externally developed and open source annotation, analysis and visualization tools. Data is highly integrated and cross-referenced to allow discovery of knowledge. Crops with rich datasets in our databases include tomato, pepper, tobacco, coffee, and petunia. Biologists and breeders interested in utilizing the data and tools available at solgenomics.net will benefit from attending the workshop. Bioinformaticians interested in exchanging experiences, ideas and co-developing tools are also welcome.
Date: Tuesday, January 14, 2014
Time: 10:30 AM-12:40 PM
Room: Towne - Meeting House
Organizers:
Isaak Y Tecle and Lukas Mueller
10:30 AM
W704
SGN: Overview and Updates
Lukas Mueller, Boyce Thompson Institute for Plant Research

10:50 AM
W705
Breeder Tools
Lukas Mueller, Boyce Thompson Institute for Plant Research

11:10 AM
W706
solGS: A Bioinformatics Solution for Genomic Selection
Isaak Y. Tecle, Boyce Thompson Institute for Plant Research; Naama Menda, Boyce Thompson Institute for Plant Research; Jeremy D. Edwards, Boyce Thompson Institute for Plant Research; Lukas Mueller, Boyce Thompson Institute for Plant Research

PDF file
11:30 AM
W707
Accessing SGN Genomes through Tools
Susan R. Strickler, Boyce Thompson Institute for Plant Research

11:50 AM
W708
Sequence Analysis Tools
Noe Fernandez-Pozo, Boyce Thompson Institute for Plant Research

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