2665IWGSC - Standards and Protocols
Update activity on wheat genome sequencing activity with a focus on data standards and new protocols being developed
Date: Tuesday, January 13, 2015
Time: 1:30 PM-6:10 PM
Room: Pacific Salon 3
Organizers:
Jane Rogers
and
Catherine Feuillet
2:30 PM
Chromosome 1B: A Step Further in the Sequencing of the Hexaploid Wheat Genome
Adriana Alberti, CEA - Genoscope;
Valerie Barbe, CEA - Genoscope;
Arnaud Couloux, CEA - Genoscope;
Frederic Choulet, INRA GDEC;
Sophie Mangenot, CEA - Genoscope;
Karine Labadie, CEA - Genoscope;
Jean Marc Aury, CEA - Genoscope;
Romain Philippe, INRA GDEC;
Céline Durand, CEA - Genoscope;
Caroline Belser, CEA - Genoscope;
Arnaud Bellec, INRA - CNRGV;
Hélène Bergès, INRA - CNRGV;
Zeev M. Frenkel, University of Haifa;
Tzion Fahima, University of Haifa;
Abraham B. Korol, Institute of Evolution, University of Haifa;
International Wheat Genome Sequencing Consortium, IWGSC;
Catherine Feuillet, Bayer CropScience;
Etienne Paux, INRA GDEC;
Patrick Wincker, CEA - Genoscope
2:50 PM
Improving the Physical Map and Sequence of the 7DS with a BioNano Map
Hana Simkova, Institute of Experimental Botany;
Alex Hastie, BioNano Genomics;
Helena Stankova, Institute of Experimental Botany;
Jan Vrana, Institute of Experimental Botany;
Marie Kubaláková, Institute of Experimental Botany;
Paul Visendi, University of Brisbane;
Satomi Hayashi, University of Queensland;
Ming-Cheng Luo, Department of Plant Sciences, UC Davis;
Jacqueline Batley, University of Western Australia;
David Edwards, University of Queensland;
Jaroslav Dolezel, Institute of Experimental Botany
3:50 PM
BioNano Genome Map to Facilitate the Assembly of the Aegilops tauschii Genome
Ming-Cheng Luo, Department of Plant Sciences, University of California;
Tingting Zhu, Department of Plant Sciences, University of California, Davis;
Karin R. Deal, Department of Plant Sciences, University of California, Davis;
Armond Murray, Department of Plant Sciences, University of California;
Sonny Van, Department of Plant Sciences, University of California;
Thanh C. Ngo, Department of Plant Sciences, University of California;
Shuyang Liu, Department of Plant Sciences, University of California;
Juan C. Rodriguez, Department of Plant Sciences, University of California;
Hai Long, Department of Plant Sciences, University of California;
Lichan Xiao, Department of Plant Sciences, University of California;
Naxin Huo, Department of Plant Sciences, University of California;
Luis Curiel, Department of Plant Sciences, University of California;
Luxia Yuan, Department of Plant Sciences, University of California;
Yi Wang, Department of Plant Sciences, University of California;
Yong Q. Gu, USDA ARS, Western Regional Research Center;
Olin Anderson, USDA ARS, Western Regional Research Center;
Daniela Puiu, Johns Hopkins University, School of Medicine;
Geo Pertea, Johns Hopkins University, School of Medicine;
Steven L Salzberg, Johns Hopkins University, School of Medicine;
Shuhong Ouyang, China Agricultural University;
Zhenzhong Wang, China Agricultural University;
Yong Liang, China Agricultural University;
Qixin Sun, China Agricultural University;
Zhiyong Liu, China Agricultural University;
Long Mao, Chinese Academy of Agricultural Sciences;
Zhengqiang Ma, Nanjing Agricultural University;
Jan Dvorak, Department of Plant Sciences, University of California
4:50 PM
IWGSC Sequence Repository: How to Facilitate Pseudomolecule Assembly?
Michael Alaux, INRA - URGI;
Frederic Choulet, INRA GDEC;
Loic Couderc, INRA - URGI;
Françoise Alfama, INRA - URGI;
Véronique Jamilloux, INRA - URGI;
Thomas Letellier, INRA - URGI;
Raphael Flores, INRA - URGI;
Claire Guerche, INRA - URGI;
Mikael Loaec, INRA - URGI;
Etienne Paux, INRA GDEC;
Delphine Steinbach, INRA - URGI;
Hadi Quesneville, INRA - URGI
