P0078
Bioinformatics: Software - Odd

Date: Monday, January 12, 2015
Time: 3:00 PM-4:30 PM
Room:
P1137
miRseqViewer: Multi-panel Visualization of Sequence, Structure and Expression for Analysis of microRNA Sequencing Data
Insu Jang, Korea Research Institute of Bioscience and Biotechnology; Seongjin Park, Korea Research Institute Bioscience and Biotechnology(KRIBB); Jin Ok Yang, KRIBB; Byungwook Lee, KRIBB

P1139
ampliconDIVider: Detection of CRISPR-Induced Variants in PCR Amplicons - Zebrafish
Matthew C. LaFave, National Human Genome Research Institute, NIH

P1141
A GUI Application "CA Plot Viewer" for Large-Scale Gene Expression Analysis with Next-Generation Sequencing Technology
Kentaro Yano, School of Agri., Meiji University; Tomoyuki Takano, School of Agri., Meiji University; Shin Terashima, School of Agri., Meiji University; Yukino Nakamura, School of Agri., Meiji University

P1143
DNA Subway Yellow and Blue Lines: TEs, Gene Discovery and DNA Barcoding
James Burnette, University of California, Riverside

P1145
Geneious R8: A Bioinformatics Platform for Biologists
Christian Olsen, Biomatters, Inc.; Kashef Qaadri, Biomatters, Inc.; Richard Moir, Biomatters, Ltd.; Matt Kearse, Biomatters, Ltd.; Simon Buxton, Biomatters, Ltd.; Matthew Cheung, Biomatters, Ltd.; Jonas Kuhn, Biomatters, Ltd.; Steven Stones-Havas, Biomatters, Ltd.; Chris Duran, Biomatters, Ltd.

P1147
Exploring the Structural Basis of the Genotype and Phenotype Relationship with Public Data and Molecule WorldTM on the iPad
Todd Smith, Digital World Biology; Sandra Porter, Digital World Biology

P1149
Flotilla: An Open-Source Toolkit for Single-Cell RNA-Seq Data Analysis in Multiple Organisms
Michael T. Lovci, University of California, San Diego; Olga B. Botvinnik, University of California, San Diego; Patrick Liu, University of California, San Diego; Boyko Kakaradov, University of California, San Diego; Leen Jamal Schafer, University of California, San Diego; Yan Song, University of California, San Diego; Gene W. Yeo, University of California, San Diego

P1151
A Comparison of Transcript Discovery with Different de novo Assembly Software Tools
Le-Shin Wu, NCGAS, Indiana University; Keithanne Mockaitis, Indiana University

P1153
GenSAS: A Web-Based Platform for Automated and Manual Curation of Genomic Sequence
Stephen P. Ficklin, Washington State University; Taein Lee, Washington State University; Jodi L. Humann, Washington State University; Chun-Huai Cheng, Washington State University; Jill Wegrzyn, University of Connecticut; David Neale, Dept. Plant Sciences University of California Davis; Dorrie Main, Washington State University

P1155
LAILAPS and e!DAL: Explore Genome Annotations and Publish Research Data
Uwe Scholz, Institute of Plant Genetics and Crop Plant Research (IPK) Gatersleben; Daniel Arend, Institute of Plant Genetics and Crop Plant Research (IPK) Gatersleben; Jinbo Chen, Institute of Plant Genetics and Crop Plant Research (IPK) Gatersleben; Christian Colmsee, Institute of Plant Genetics and Crop Plant Research (IPK) Gatersleben; Maria Esch, Institute of Plant Genetics and Crop Plant Research (IPK) Gatersleben; Matthias Lange, Institute of Plant Genetics and Crop Plant Research (IPK) Gatersleben

P1157
An Application Programming Interface (API) for Programmable Access to Animal QTLdb
Zhiliang Hu, Iowa State University; James E. Koltes, Department of Animal Science, Iowa State University; Eric Fritz-Waters, Department of Animal Science, Iowa State University; Carissa Park, Iowa State University; James M. Reecy, Iowa State University

P1159
Automated de novo Transcriptome Analysis of Eukaryotic Organisms
Andrea Waksmunski, Juniata College; Tessa Pierce, University of California - San Diego and Scripps Institution of Oceanography; Terry Gaasterland, University of California - San Diego and Scripps Institution of Oceanography

P1161
A Comprehensive Method and Tool for Identifying Conserved Cis-Element Motifs on the Basis of Large-Scale Gene Expression and Sequence Data
Yohei Sasaki, School of Agri., Meiji University; Kentaro Yano, School of Agri., Meiji University; Hajime Ohyanagi, School of Agriculture, Meiji University; Tomoyuki Takano, School of Agri., Meiji University, CREST, JST; Masaaki Kobayashi, School of Agri., Meiji University; Shin Terashima, School of Agri., Meiji University; Naoki Yamamoto, School of Agri., Meiji University; Masato Otani, Sch. of Cell & Systems Biology.,Toronto Univ.; Eiji Nambara, Dept. of Cell & Systems Biology., University of Toronto

P1163
BioGPU: A High Computation Performance Tool for Genome-Wide Association Study
Meng Huang, Washington State University

P1165
An Elegant Solution to Automate Data Analysis for Axiom® Genotyping Arrays
MariEllen Cottman, Affymetrix, Inc.; Jae Brodsky, Affymetrix, Inc.; Ali Pirani, Affymetrix, Inc.; Kevin Leung, Affymetrix, Inc.; Breck Ohlson, Affymetrix, Inc.; Sangitaq Patil, Affymetrix, Inc.; Raymond Wheeler, Affymetrix, Inc.; Anthony Kosky, Affymetrix, Inc.; David Le, Affymetrix, Inc.; Najeeb Hashmi, Affymetrix, Inc.; Thy Hoang, Affymetrix, Inc.; Fue Thao, Affymetrix, Inc.; Richard Sating, Affymetrix, Inc.; Vlad Libershteyn, Affymetrix, Inc.; John Burrill, Affymetrix, Inc.

P1167
Circular RNA Detection in the Transcriptomes of Various Species
Lennart Opitz, Functional Genomics Center Zurich, ETH/UZH; Catharine Aquino Fournier, Functional Genomics Center Zurich, ETH/UZH

P1225
Unsupervised RNA-Seq-Based Genome Annotation with Genemark-ET and Augustus
Simone Lange, University of Greifswald; Katharina Hoff, University of Greifswald; Alexandre Lomsadze, Georgia Institute of Technology; Mark Borodovsky, Georgia Institute of Technology; Mario Stanke, University of Greifswald

P1225
DMap - a Fast Cross-Platform Genetic Map Viewer
Reinhard Simon, International Potato Center (CIP); Mirella Flores, International Potato Center; Hannele Lindqvist-Kreuze, International Potato Center; Maria Caraza, Dalhousie University; Merideth Bonierbale, International Potato Center; Elisa Mihovilovich, International Potato Center

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