P0052Genome Mapping, Tagging & Characterization: Legumes, Soybeans, Common Beans - Odd
Date: Monday, January 12, 2015
Time: 3:00 PM-4:30 PM
Room:
The cis-Golgi Gene, Syntaxin 31, Induces the Expression of LESION SIMULATING DISEASE1 (LSD1) which Functions in Glycine max Defense to the Root Parasite Heterodera glycines
Shankar R. Pant, Department of Biological Sciences;
Brant T. McNeece, Department of Biological Sciences;
Keshav Sharma, Department of Biological Sciences;
Jiang Jian, Department of Biological Sciences;
Prakash Niraula, Department of Biological Sciences;
Aparna Krishnavajhala, Department of Biochemistry, Molecular Biology, Entomology and Plant Pathology;
Gary W. Lawrence, Department of Biochemistry, Molecular Biology, Entomology and Plant Pathology;
Vincent P. Klink, Department of Biological Sciences
What's New at SoyBase?
David Grant, USDA-ARS-CICGRU;
Rex Nelson, USDA-ARS-CICGRU;
Kevin H. Feeley, USDA-ARS-CICGRU;
Jacqueline D. Campbell, Iowa State University;
Sudhansu Dash, Iowa State University;
Nathan Weeks, USDA-ARS-CICGRU;
Steven B. Cannon, USDA-ARS-CICGRU
The Legume Information System (LegumeInfo.org) 2015
Steven B. Cannon, USDA-ARS-CICGRU;
Andrew D. Farmer, National Center for Genome Resources (NCGR);
Pooja E. Umale, National Center for Genome Resources (NCGR);
Hrishikesh Lokhande, NCGR;
Alan Cleary, NCGR;
Nathan T. Weeks, USDA-ARS-CICGRU;
Scott R. Kalberer, USDA-ARS-CICGRU;
Ethalinda Cannon, Iowa State University;
Sudhansu Dash, Virtual Reality Application Center;
Deepak Bitragunta, Iowa State University;
Jugpreet Singh, ORISE Fellow, USDA-ARS-CICGRU
SoyMap2: Investigating Genetic Diversity in Wild Relatives of Soybean
Jacqueline D. Campbell, Iowa State University;
Wei Huang, Iowa State University;
Sudhansu Dash, Virtual Reality Application Center;
Eun-Young Hwang, University of Maryland;
Namhee Jeong, Cornell University;
Brian Nadon, University of Georgia;
Qijian Song, USDA-ARS, Soybean Genomics and Improvement Lab;
Michelle A. Graham, USDA-ARS-CICGRU;
Jane Grimwood, HudsonAlpha Institute for Biotechnology;
Michael Gonzales, University of Georgia;
Steven Cannon, Iowa State University - USDA-ARS;
Jessica Schlueter, University of North Carolina at Charlotte;
Jianxin Ma, Purdue University;
Jeremy Schmutz, HudsonAlpha Institute for Biotechnology;
Jeffrey J. Doyle, Plant Biology Department, Cornell University;
Perry Cregan, USDA-ARS, Soybean Genomics and Improvement Lab;
Scott A. Jackson, University of Georgia
Dt2 Is a Gain-of-Function MADS-Domain Factor Gene That Specifies Semideterminacy in Soybean
Jieqing Ping, Purdue University;
Yunfeng Liu, Purdue University;
Lianjun Sun, Purdue University;
Meixia Zhao, Purdue University;
Zhixi Tian, Chinese Academy of Sciences;
Hanh Nguyen, University of Nebraska;
Yinghui Li, Chinese Acdemy of Agricultural Sciences;
Lijuan Qiu, Chinese Acdemy of Agricultural Sciences;
Randy Nelson, USDA ARS;
Thomas E Clemente, University of Nebraska-Lincoln;
James E. Specht, University of Nebraska;
Jianxin Ma, Purdue University
Genotype and Tissue-Specific Differences of DNA Methylation in Soybean
Kyung Do Kim, University of Georgia;
Jason Abernathy, University of Georgia;
Xin Zhou, Washington University in St. Louis;
Marc Libault, University of Oklahoma;
Jane Grimwood, HudsonAlpha Institute for Biotechnology;
Blake Meyers, Donald Danforth Plant Science Center;
Scott A. Jackson, University of Georgia
Identification of QTLs for Single Seed Weight and Their Relationships to Other Seed Yield Components in Soybean
Kenichiro Fujii, National Institute of Agrobiological Sciences;
Takashi Sayama, National Institute of Agrobiological Sciences;
Kyoko Takagi, NARO Agricultural Research Center;
Kazumasa Kosuge, Ibaraki Agricultural Institute;
Katsunori Okano, Ibaraki Agricultural Institute;
Kunihiko Komatsu, NARO Hokkaido Agricultural Research Center;
Naoya Yamaguchi, HRO Tokachi Agricultural Experiment Station;
Chika Suzuki, HRO Central Agricultural Experiment Station;
Akito Kaga, National Institute of Agrobiological Sciences;
Masao Ishimoto, National Institute of Agrobiological Sciences
Genome-Wide Structural Profiling and Bulk Segregant Sequencing Resolve a NAP1 Mutation Underlying a Short Trichome Phenotype in Soybean
Benjamin W. Campbell, Department of Agronomy and Plant Genetics, University of Minnesota;
Suma Sreekanta, Department of Agronomy & Plant Genetics, University of Minnesota;
Fengli Fu, Department of Agronomy and Plant Genetics, University of Minnesota;
Thomas Y. Kono, University of Minnesota, Department of Agronomy;
Gary J. Muehlbauer, Department of Plant Biology, University of Minnesota;
Robert M. Stupar, Department of Agronomy and Plant Genetics, University of Minnesota
Integrating Quantitative Trait Loci (QTL) from Many Studies: Approaches from Soybean, Common Bean, and Peanut
Jugpreet Singh, USDA-ARS;
Scott R. Kalberer, USDA-ARS-CICGRU;
Robert Baker, USDA-ARS-CICGRU;
Ethalinda Cannon, Iowa State University;
Sudhansu Dash, Virtual Reality Application Center;
Andrew D. Farmer, National Center for Genome Resources (NCGR);
Kevin H. Feeley, USDA-ARS-CICGRU;
Rex Nelson, USDA-ARS-CICGRU;
David Grant, USDA-ARS-CICGRU and Iowa State University;
Steven B. Cannon, USDA-ARS-CICGRU
PeanutBase: A Resource for Peanut Genetic, Genomic, and Trait Information
Sudhansu Dash, Iowa State University;
Ethalinda Cannon, Iowa State University;
Scott R. Kalberer, USDA-ARS-CICGRU;
Jugpreet Singh, ORISE Fellow, USDA-ARS-CICGRU;
Deepak Bitragunta, Iowa State University;
Longhui Ren, Iowa State University;
Wei Huang, Iowa State University;
Nathan T. Weeks, USDA-ARS-CICGRU;
Julie Dickerson, National Science Foundation;
Andrew D. Farmer, National Center for Genome Resources (NCGR);
Steven B. Cannon, USDA-ARS-CICGRU
DArT/DArTseq Based Genetic Maps for Identification of Genomic Regions Controlling Oil Content, Fatty Acids and Fresh Seed Dormancy in Peanut (Arachis hypogea L.)
Manish K Vishwakarma, ICRISAT;
Yaduru Shasidhar, ICRISAT;
Manish K Pandey, ICRISAT;
Pasupuleti Janila, ICRISAT;
Surendra S Manohar, ICRISAT;
Shyam N Nigam, ICRISAT;
Hari D Upadhyaya, ICRISAT;
Baozhu Guo, USDA-ARS, Crop Protection and Management Research Unit;
Rajeev K Varshney, ICRISAT
Retroelements of Arachis duranensis (AA) and A. ipaënsis (BB) Genomes and their Distribution in Peanut Chromosomes
Bruna S. Vidigal, Embrapa Genetic Reserach and Biotechnology;
David Bertioli, University of Brasilia;
Igor Bacon Carvalho, University of Brasilia;
Eliza Nascimento, University of Brasilia;
Patricia Messenberg Guimarães, Cenargen-EMBRAPA;
Soraya C M Leal-Bertioli, Embrapa Genetic Resources&Biotech;
Ana C. M. Brasileiro, EMBRAPA Recursos Genéticos e Biotecnologia;
Marcio de Carvalho Moretzsohn, Embrapa Genetic Resources&Biotech;
Ana Claudia Guerra Araujo, EMBRAPA
Genes Involved in Drought Stress Response and Tolerance in Wild Peanut Relatives
Patricia Messenberg Guimarães, Cenargen-EMBRAPA;
Carolina Morgante, EMBRAPA;
Ana Claudia Guerra Araujo, EMBRAPA;
Soraya C M Leal-Bertioli, Embrapa Genetic Resources&Biotech;
Orzenil Bonfim Silva-Junior, Bioinformatics Lab - EMBRAPA Genetic Resources & Biotechnology;
Roberto C Togawa, EMBRAPA - Brazilian Agricultural Research Corporation;
David Bertioli, University of Brasilia;
Ana C. M. Brasileiro, EMBRAPA Recursos Genéticos e Biotecnologia
Single Molecule, Real-Time Sequencing of the Genomes of Genus Vigna
Hiroaki Sakai, National Institute of Agrobiological Sciences;
Ken Naito, National Institute of Agrobiological Sciences;
Kazuhito Satou, Okinawa Institute of Advanced Sciences;
Kuniko Teruya, Okinawa Institute of Advanced Sciences;
Eri Ogiso-Tanaka, National Institute of Agrobiological Sciences;
Akito Kaga, National Institute of Agrobiological Sciences;
Takeshi Itoh, National Institute of Agrobiological Sciences;
Takashi Hirano, Okinawa Institute of Advanced Sciences;
Norihiko Tomooka, National Institute of Agrobiological Sciences
Next Generation Sequencing Identifies Regions of Introgression and Differentially Expressed Genes for Sclerotinia Resistance in Common Bean
Sujan Mamidi, Dept of Plant Sciences, North Dakota State University;
Samira Mafi Moghaddam, Dept of Plant Sciences, North Dakota State University;
Rian Lee, Dept of Plant Sciences, North Dakota State University;
Jim Myers, Oregon State University;
Phillip Miklas, USDA-ARS;
Phillip McClean, Dept of Plant Sciences, North Dakota State University
The Consequence of Domestication in the Common Bean
Elisa Bellucci, Dipartimento di Scienze Agrarie, Alimentari e Ambientali, Università Politecnica delle Marche;
Elena Bitocchi, Dipartimento di Scienze Agrarie, Alimentari e Ambientali, Universita` Politecnica delle Marche;
Alberto Ferrarini, University of Verona;
Andrea Benazzo, Università degli Studi di Ferrara;
Eleonora Biagetti, Università Politecnica delle Marche;
Domenico Rau, Sezione di Agronomia, Coltivazioni Erbacee e Genetica, Dipartimento di Agraria, Università degli Studi di Sassari;
Monica Rodriguez, Sezione di Agronomia, Coltivazioni Erbacee e Genetica, Dipartimento di Agraria, Università degli Studi di Sassari;
Giovanna Attene, Sezione di Agronomia, Coltivazioni Erbacee e Genetica, Dipartimento di Agraria, Università degli Studi di Sassari;
Emidio Albertini, University of Perugia;
Scott A. Jackson, University of Georgia;
Laura Nanni, Dipartimento di Scienze Agrarie, Alimentari e Ambientali, Università Politecnica delle Marche;
Alisdair R. Fernie, Max Planck Institute of Molecular Plant Physiology;
Zoran Nikoloski, Max Planck Institute of Molecular Plant Physiology;
Giorgio Bertorelle, Università degli Studi di Ferrara;
Massimo Delledonne, University of Verona;
Roberto Papa, Dipartimento di Scienze Agrarie, Alimentari e Ambientali, Universita` Politecnica delle Marche
Discovering the Genetic Architecture of Dietary Fiber and Oligosaccharide Content in Common Bean (Phaseolus vulgaris )
Samira Mafi Moghaddam, Dept of Plant Sciences, North Dakota State University;
Dimas Echeverria, Colorado State University;
Henry J. Thompson, Colorado State University;
Mark A. Brick, Dept of Soil and Crop Sciences,Colorado State University;
Leslie A. Brick, Universtiy of Rhode Island;
Sujan Mamidi, Dept of Plant Sciences, North Dakota State University;
Rian Lee, Dept of Plant Sciences, North Dakota State University;
Phillip McClean, Dept of Plant Sciences, North Dakota State University
Genome-Wide Screening for Epigenome Modifications and Transcriptome Regulation during Rust Pathogen, Uromyces appendiculatus, Infection in Common Bean (Phaseolus vulgaris L.)
Vasudevan Ayyappan, Molecular Genetics & Epigenomics Laboratory, Delaware State University;
Jyothi Thimmapuram, Bioinformatics Core, Purdue University;
Ketaki Bhide, Purdue University;
Antonette Todd, Molecular Genetics & Epigenomics Laboratory, Delaware State University;
Yaqoob Thurston, South Dakota State University;
Tomasz Smolinski, Delaware State University;
Muthusamy Manoharan, University of Arkansan-PIne Bluff;
Bruce Kingham, University of Delaware-DBI;
Venu (Kal) Kalavacharla, Delaware State University
Medicago Genome Assembly with Long-Read and Short-Read Sequencing
Jason R. Miller, J. Craig Venter Institute;
Brian Walenz, J. Craig Venter Institute;
Li Song, Johns Hopkins University;
Peng Zhou, Department of Plant Pathology, University of Minnesota;
Thiru Ramaraj, National Center for Genome Resources;
Peter L. Tiffin, Department of Plant Biology, University of Minnesota;
Joann Mudge, National Center for Genome Resources (NCGR);
Kevin AT Silverstein, Supercomputing Institute, University of Minnesota;
Nevin D. Young, Department of Plant Pathology, University of Minnesota
Progress in Sequencing the Genome of Tetraploid Alfalfa (Medicago sativa L.)
Maria J. Monteros, The Samuel Roberts Noble Foundation;
Haibao Tang, University of Arizona;
Thiruvarangan Ramaraj, National Center for Genome Resources (NCGR);
Nicolas Devitt, National Center for Genome Resources (NCGR);
Connor T. Cameron, National Center for Genome Resources (NCGR);
Arvind K. Bharti, Syngenta;
Joann Mudge, National Center for Genome Resources (NCGR);
Andrew D. Farmer, National Center for Genome Resources (NCGR);
Christy Motes, The Samuel Roberts Noble Foundation;
Christopher D. Town, J. Craig Venter Institute;
E. Charles Brummer, University of California, Davis;
Michael K. Udvardi, The Samuel Roberts Noble Foundation
Multiple Medicago assemblies Enable Analysis of Large Gene Families on a Genome Scale
Peng Zhou, Department of Plant Pathology, University of Minnesota;
Kevin AT Silverstein, Supercomputing Institute, University of Minnesota;
Jason R. Miller, J. Craig Venter Institute;
Joann Mudge, National Center for Genome Resources (NCGR);
Robert M. Stupar, Department of Agronomy and Plant Genetics, University of Minnesota;
Peter L. Tiffin, Department of Plant Biology, University of Minnesota;
Andrew D. Farmer, National Center for Genome Resources (NCGR);
Joseph Guhlin, Department of Plant Pathology, University of Minnesota;
Roxanne Denny, Department of Plant Pathology, University of Minnesota;
Nevin D. Young, Department of Plant Pathology, University of Minnesota
Plastome Organization and Sequence for the Mimosoid Legume Leucaena trichandra
David Hernandez, New Mexico State University;
Diana V. Dugas, New Mexico State University;
Madhugiri Nageswara-Rao, New Mexico State University;
Shannon Straub, Hobart and William Smith Colleges;
Aaron Liston, Oregon State University;
Joshua Trujillo, New Mexico State University;
Donovan Bailey, New Mexico State University
Re-Sequencing of 429 Lines for Understanding Drought and Heat Tolerance Mechanisms in Chickpea (Cicer arietinum L.)
Manish Roorkiwal, ICRISAT;
Xin Liu, Beijing Genomics Institute (BGI);
Annapurna Chitikineni, ICRISAT;
Weiming He, Beijing Genomics Institute (BGI);
Hari D Upadhyaya, ICRISAT;
Dadakhalandar Doddamani, ICRISAT;
Jainbo Jian, Beijing Genomics Institute (BGI);
Abhishek Rathore, ICRISAT;
Pooran M Gaur, ICRISAT;
Wei Yang, Beijing Genomics Institute (BGI);
Sushil Chaturvedi, Indian Institute of Pulses Research;
Narendra P Singh, Indian Institute of Pulses Research;
Swapan K Datta, ICAR;
Xu Xun, Beijing Genomics Institute (BGI);
Jun Wang, Beijing Genomics Institute (BGI);
Rajeev K Varshney, ICRISAT
Development of a High-Throughput Magnetic Bead DNA Isolation Protocol for Dry Cowpea Leaf Samples
Savanah M St Clair, University of California;
Yi-Ning Guo, Department of Botany & Plant Sciences, University of California - Riverside;
Jansen Rodrigo Pereira Santos, University of California;
Sassoum Lo, University of California Riverside;
Arsenio Daniel Ndeve, University of California;
Mitchell R. Lucas, University of California;
Steve Wanamaker, Department of Botany & Plant Sciences, University of California - Riverside;
Philip A. Roberts, Department of Nematology, University of California - Riverside;
Timothy J. Close, Department of Botany & Plant Sciences, University of California - Riverside
Application of Digital PCR in Analyzing Monsanto Roundup Ready (RR) Soybeans
Jinrong Wan, University of Missouri & National Center for Soybean Biotechnology;
Li Song, University of Missouri & National Center for Soybean Biotechnology;
Yalei Wu, Thermo Fisher Scientific Inc;
Pius Brzoska, Thermo Fisher Scientific Inc;
David Keys, Thermo Fisher Scientific Inc;
Caifu Chen, Thermo Fisher Scientific Inc;
Babu Valliyodan, University of Missouri & National Center for Soybean Biotechnology;
Grover Shannon, University of Missouri;
Henry T. Nguyen, University of Missouri
Application of Digital PCR in Analyzing Transgenic Soybeans
Li Song, University of Missouri & National Center for Soybean Biotechnology;
Jinrong Wan, University of Missouri & National Center for Soybean Biotechnology;
Babu Valliyodan, University of Missouri & National Center for Soybean Biotechnology;
Yalei Wu, Thermo Fisher Scientific Inc;
Pius Brzoska, Thermo Fisher Scientific Inc;
David Keys, Thermo Fisher Scientific Inc;
Caifu Chen, Thermo Fisher Scientific Inc;
Henry T. Nguyen, University of Missouri