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Genome Mapping, Tagging & Characterization: Rice

Whole-Genome Sequencing of 1504 Mutants Enables Rapid Functional Genomic Studies in Rice
Guotian Li, UC Davis/JBEI; Rashmi Jain, UC Davis/JBEI; Nhan T. Pham, UC-Davis; Mawsheng Chern, UC Davis/JBEI; Joel Martin, DOE Joint Genome Institute; Anna Lipzen, DOE Joint Genome Institute; Tong Wei, University of California Daivs; Wendy Schackwitz, DOE Joint Genome Institute; Kerrie W. Barry, DOE Joint Genome Institute; Jeremy Schmutz, Hudson Alpha; Pamela Ronald, Joint BioEnergy Institute (JBEI)

Mining Rice Disease Resistance Genes Using Gramene
Joshua Stein, Cold Spring Harbor Laboratory; Sharon Wei, Cold Spring Harbor Laboratory; Kapeel Chougule, Cold Spring Harbor Laboratory; Rod A. Wing, Arizona Genomics Institute, University of Arizona; Doreen Ware, Cold Spring Harbor Laboratory

Predicting GxE in Biomass and Yield of Rice: A New Modelling Method Unifying Crop Models and Genomic Prediction Models
Yusuke Toda, The University of Tokyo; Hitomi Wakatsuki, Institute for Agro-Environmental Sciences, NARO; Kaworu Ebana, Genetic Resources Center, NARO; Masanori Yamasaki, Food Resources Education and Research Center, Graduate School of Agricultural Science, Kobe University; Hiromi Kanegae, The University of Tokyo; Takeshi Hayashi, Institute of Crop Science, NARO; Hiroshi Nakagawa, Institute for Agro-Environmental Sciences, NARO; Toshihiro Hasegawa, Institute for Agro-Environmental Sciences, NARO; Hiroyoshi Iwata, The University of Tokyo

Genetic and Molecular Analysis of Anaerobic Germination in Rice
Sheng-Kai Hsu, National Taiwan University; Chih-Wei Tung, National Taiwan University

Cytokinin Delays Flowering in Rice By Inhibiting Ehd1 Protein
Gynheung An, Kyung Hee University; Lae-Hyeon Cho, Kyung Hee University

Analysis of Genes Associated with Grain Shape Traits in japonica Rice Cultivar ‘Daeribbyeo 1’
Sang-Nag Ahn, Dept. of Agronomy, Chungnam National University; Kyu-Chan Shim, Dept. of Agronomy, Chungnam National University; Yun-A Jeon, Dept. of Agronomy, Chungnam National University; Ju-Won Kang, Dept. of Agronomy, Chungnam National University; Hyun-Sook Lee, Dept. of Agronomy, Chungnam National University

Evolutionary Insights Based on Haplotype and Phylogenetic Analysis of Red Pericarp, Grain Size and Starch Synthase Genes in Wild and Cultivated Rice
Nisha Singh, ICAR-National Research Centre on Plant Biotechnology; Balwant Singh, ICAR-National Research Centre on Plant Biotechnology; Vandna Rai, ICAR-National Research Centre on Plant Biotechnology; Sukhjeet Kaur, I.K.G. Punjab Technical University; Nagendra K. Singh, ICAR-National Research Centre on Plant Biotechnology

Genetic Variation for Traits Associated with Domestication Identified in a Cultivated Rice, Nipponbare (Oryza sativa ssp. japonica) x Ancestral Rice, O. Nivara, Mapping Population
Georgia C. Eizenga, USDA-ARS Dale Bumpers National Rice Research Center; Paul L Sanchez, Rice Experiment Station (RES); Aaron K. Jackson, USDA-ARS Dale Bumpers National Rice Research Center; Jeremy D. Edwards, USDA-ARS Dale Bumpers National Rice Research Center; Bonnie L. Hurwitz, University of Arizona; Rod A. Wing, Arizona Genomics Institute, University of Arizona; David Kudrna, Arizona Genomics Institute

Detection of a Genetic Locus, Plays a Role in Determining High Amylose Content in Rice Using Whole Genome Re-Sequencing
Heng Wang, Pusan National University; Da-Eun Im, Pusan National University; Seong-Gyu Jang, Pusan National University; Ah-Rim Lee, Pusan National University; So-Yeon Park, Pusan National University; Ji-Ung Jeung, National Institute of Crop Science, RDA; Soon Wook Kwon, Pusan National University

Application of Forward and Reverse Genetics to Identify Rice Mutants with Altered Starch Traits
HyunJung Kim, Dept. of Plant Sciences, UC Davis; Mi-Ra Yoon, Dept. of Central Area Crop Science, National Institute of Crop Science; Areum Chun, Dept. of Central Area Crop Science, National Institute of Crop Science; Thomas H. Tai, USDA-ARS

Genome-Wide Association Study Identifies Main Factors Controlling the Anthocyanidin Accumulation in Rice Leaves
Jie Zheng, National Key Laboratory of Crop Genetic Improvement and National Centre of Plant Gene Research (Wuhan), Huazhong Agricultural University; Zaihui Zhou, National Key Laboratory of Crop Genetic Improvement and National Centre of Plant Gene Research (Wuhan), Huazhong Agricultural University; Hao Wu, National Key Laboratory of Crop Genetic Improvement and National Centre of Plant Gene Research (Wuhan), Huazhong Agricultural University; Zijin Weng, National Key Laboratory of Crop Genetic Improvement and National Centre of Plant Gene Research (Wuhan), Huazhong Agricultural University; Huabing Zhu, National Key Laboratory of Crop Genetic Improvement and National Centre of Plant Gene Research (Wuhan), Huazhong Agricultural University; Hao Chen, National Key Laboratory of Crop Genetic Improvement and National Centre of Plant Gene Research, Huazhong Agricultural University

Targeting a Peppermint (E)-β-Farnesene Synthase into the Rice Chloroplast Enhanced the Ability of the Transgenic Rice Emitting (E)-β-Farnesene
Liang Gao, National Key Laboratory of Crop Genetic Improvement and National Centre of Plant Gene Research, Huazhong Agricultural University; Jing-Jiang Zhou, Department of Biological Chemistry and Crop Protection, Rothamsted Research; Yulan Zou, College of Life Science and Technology, Huazhong Agricultural University; Fei Zhou, National Key Laboratory of Crop Genetic Improvement and National Centre of Plant Gene Research, Huazhong Agricultural University; Hao Chen, National Key Laboratory of Crop Genetic Improvement and National Centre of Plant Gene Research, Huazhong Agricultural University; Yongjun Lin, National Key Laboratory of Crop Genetic Improvement and National Centre of Plant Gene Research, Huazhong Agricultural University

Use of Mechanistic and Empirical Models of Photosynthesis to Explore Genetic Variation in Rice
Kusum Naithani, University of Arkansas; Jackson Massanelli, University of Arkansas; Madeleine Meadows-McDonnell, Smith College; Carly Konzelman, University of Arkansas; Jessica Moon, University of Arkansas; Julie Thomas, University of Arkansas; Anuj Kumar, University of Arkansas; Andy Pereira, University of Arkansas

On the Origin of Burst of MITE Element mPing in Rice Population
Jinfeng Chen, University of Riverside, California; Lu Lu, University of California, Riverside; Jason Stajich, University of California Riverside; Susan Wessler, University of California

Analysis of Quantitative Trait Loci of Allelopathic Trait in Rice
Gi-Won Cho, Konkuk University; Yong-Taek Oh, Konkuk University; Min-Jeong Ahn, Konkuk University; Ill-Min Chung, Konkuk University

Genomic Selection for Water Use Efficiency in japonica Rice and Evaluation of Different Parameters Implicated on the Accuracy Level
Manel Ben Hassen, Department of Agriculture, University of Milan; Tuong-Vi Cao, CIRAD; Jaquin Lavalle, CIRAD; Cinzia Colombi, Fondazione Parco Tecnologico Padano; Gabriele Orasen, Department of Agriculture, University of Milan; Joel Rakotomalala, FOFIFA; Lisy Razafinimpiasa, FOFIFA; Cecilia Bertone, Department of Agriculture, University of Milan; Chiara Biselli, CREA Rice research unit; Luigi Cattivelli, CREA Genomics research centre; Nourollah Ahmadi, CIRAD; Giampiero Valè, CREA Rice research unit

Genome Wide Association Study of Water Use Efficiency and Drought Resistance Traits in Rice
Anuj Kumar, University of Arkansas; Julie Thomas, University of Arkansas; Suprtim Basu, University of Arkansas; Ramegowda Venkategowda, University of Arkansas; Ainong Shi, University of Arkansas; Sara Yingling, University of Arkansas; Andy Pereira, University of Arkansas

Understanding the Molecular Basis of Transgressive Phenotypes in Rice: A Case Study on Novel Dehydration Stress Tolerance Mechanisms in Recombinant Inbred Lines Derived from Dehydration-Sensitive Parents
Jake Michael Gendron, Texas Tech University; Ai Kitazumi, Department of Plant and Soil Science, Texas Tech University; Isaiah Pabuayon, Department of Plant and Soil Science, Texas Tech University; Kevin R. Cushman, Department of Plant and Soil Science, Texas Tech University; Benildo G. de los Reyes, Department of Plant and Soil Science, Texas Tech University

Functional Genomics and Transcriptomics on Abiotic Stresses in Rice
Ramachandran Srinivasan, National University of Singapore

QTL Mapping of Grain Quality Traits Using Introgression Lines Carrying Oryza rufipogon Chromosome Segments in japonica Rice
Sang-Nag Ahn, Dept. of Agronomy, Chungnam National University; Yeo-Tae Yun, Chungnam Agricultural Research and Extension Services; Chong-Tae Chung, Chungnam Agricultural Research and Extension Services; Yeong-Ju Lee, Chungnam Agricultural Research and Extension Services; HanJung Na, Chungnam Agricultural Research and Extension Services; Jae-Chul Lee, Chungnam Agricultural Research and Extension Services; Sun-Gye Lee, Chungcheongnamdo Agricultural Research and Extension Services; Young-Hwan Yoon, Chungnam Agricultural Research and Extension Services; Ju-Won Kang, Dept. of Agronomy, Chungnam National University; Hyun-Sook Lee, Dept. of Agronomy, Chungnam National University

A Green Revolution-Related Allele from Taiwan to the World
Fu-Jin Wei, Institute of Plant and Microbial Biology, Academia Sinica; Yuan-ching Tsai, Institute of Plant and Microbial Biology, Academia Sinica; Yann-rong Lin, Department of Agronomy, National Taiwan University; Yue-ie C. Hsing, Institute of Plant and Microbial Biology, Academia Sinica

Population Genomics Identifies the Origin and Signatures of Selection of Korean Weedy Rice
Qiang He, Kongju National University; Kyu-Won Kim, Kongju National University; Yong-Jin Park, Kongju National University

Genome Diversity and Domestication in African Rice: A Genome-Wide Analysis By High-Depth Sequencing of Wild and Cultivated African Rice
Christine Tranchant-Dubreuil, IRD - UMR DIADE; Philippe Cubry, IRD; Cécile Monat, IRD - UMR DIADE; Anne Celine Thuillet, IRD; Nora Scarcelli, IRD; Olivier Francois, Grenoble INP TIMC-IMAG, Faculty of Medicine; Karine Labadie, CEA; Stefan Engelen, CEA - Genoscope; François Sabot, IRD - UMR DIADE; Yves P. Vigouroux, IRD

Chromosome Number Reduction and Genomic Changes in Grasses
Jinpeng Wang, North China University of Science and Technology

Increasing Ligation Efficiency and Reducing Bias for Small RNA Library Prep with Plant Samples
Suk Ho Eun, Bioo Scientific; Kevin Allen, Bioo Scientific; Dawn Obermoeller, Bioo Scientific; Masoud Toloue, Bioo Scientific

Hybrid Breeding of Rice via Genomic Selection
Yanru Cui, University of California

Identification and Characterization of a Rice Promoter Specifically Responsive to the Attack of Brown Planthopper (Nilaparvata lugens)
Hanpeng Li, College of Plant Science and Technology, Huazhong Agricultural University; Yulan Zou, College of Life Science and Technology, Huazhong Agricultural University; Hongxia Hua, College of Plant Science and Technology, Huazhong Agricultural University

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